RNA id: XM_026921466.2


Basic Information

Item Value
RNA id XM_026921466.2
length 2129
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113531016
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13531313 ~ 13652955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAGAGGCGCTGCTCCGTAACcattcactactgtgtgtgtgtgtcagctagGCAGCTTGCAGAGCTCTGGACAAGACTGATTTGGTTTCGGCTcgtatttgtgttttgtgtaccaGCTTGTGATTGACAATGCATGCGTCCTGCTGGAATACCGCGTCCTAGAAGTAGCGCGTGTTGGGATTTTACTCCACTGACGTTTGCCGAAACTTCGTGGCGCGCGCCTTGCTCATCCGCGTCCTCTTTCATTTCTTGTACCGGATTAAAGGCTTTTCACTTCACCGCGCACTTCACATGGTATACTGGTTCCCAGAGCAGGGTATGCTCGTTTCCACGTACAGCGCGCGCACTCCAGATGCATGTACTGCTTGACCGGGACAGGAAAGAAGCCGCGGTTGGCACCGGCACCATGTTCAGCTGTGTGGGCTGCTTCTGGCTGCTGCTGTCCGCCGCGCTCGTTGCGCTCTGCAGCTTCAGCTTCATCTCTCCAGCCTGGATCGTGAAGGAGCAGCAGCACGGGAGGAGCGGCCACTCGGTCAGTTTCGGCCTGCTCTGGCACTGCTCCGAGTCTCTGGACCACATGTACACATGCTACGCGTTTGGCGGCATTGGGAGGTTTGCCGAGATTCCCTCCAGCTCCTGGCAGaCGAGCGCTGTGCTGTGCTCCGGAGGTTGCGCGCTGTTGGCCGTCAGCTCGCTGCTGGCTATCATCACCATCTTCTTGCCTGGTGGAAACTGCGAGAGGAAGATCTGCACACTGGCTGGGTACATGCAGATGGCTGCAGtgtTCATCATGGCATCTGGCTTGCTGGTTTATCCCTTTGGCCTAAACTCCAGTTTGGTCAAGTCTTTCTGCGGAAACTCGGACATCTACTACGCCGGCGAGTGCCAGATAGGCTGGGGCTACATGTTGGCCATCGTGGGTGTCATGCTCACCCTCTTTTTACCCTTCTTTGCCAAGTACGCCCCAAAAGAGCATCTCCTGCCCACCCCACTGCCCACACTTTTATAAACCTCCTGCTATGCCCATCGTATCTCCTCTGAGCTGTTAAGATCTGTATCGCCCCATTCTTTTTCTTGGTCAACAATGATAATGTTGCCACTTTGGAATAAGTGTGCCCAGAGGAGCCATTGTATTCATTGTGTGATGTGCTACATTGTCTTCCTTCACCTGATAAGCTACTTCCTTTCATCGGCATCCCTCGTGGTTCTGAAAAGTCTTTATTTGGAAATGCAAATTCCTGGAAACTCCCgtttttccttttctcactaCAAACTAATTTATGCTTTTAATCACATGAAATGCAATTTAATGCATCAACACTGAAATCTTTGGAAAGGCAACACCAAAACAGCAGACTAAACTATGCGAATGGTAAATCTAACATTCTAATTCTACCTAATACACATCTGGATGCAAAGAATGTGAGAGGACAAGGAGAACTGTTCTCCCAAACATCAGGGATTATTCTGAACATCAAGAGGAAAGCAAGGAACTCAAGTCTTTCATGCAACGTCAAATAATATTCAACTACCCAAGACCAATTACAAAGGAGAGTAGGAACACTGTTCTTGGATCCACTGGCTATGaatgttttcttcttcactATGGATCAGGCTTTTGAGGAAATAAAATGGGTTTATGATCCCAATGAAAATCTGAAGGGTTTGGAAAATCTGCCATATATTTATCCAGTAACAACAAACACTGTGGCTAACAGGCTAGGAGaacagaaaaactgaaaaattttttcttaaaaaatttattacacaaactggtgtttttttaatatattttgcttTAGAACCTGGGCTGTGACTAGTCAGTGCACGTCCAGCAGTGAGAAAATAGTAGATGACGCTTGTGACCacttaaatgaagaaaaaaaaaaagggagtggGGGCAACAAAAGCACTGACATTTTCAACTTGTGTTGTAATTTTAAATGACCTAAAAATCTGAAAacctgtgtgtctctgtttgccGTCACTTCCTATCAGTTTTAATAGGAATATTAAATGTCCAAGTTATACCGTCTGTTTTGTGCTTGGACCCTTCACTAAACTGAATATTCAGGATTACACaagatcaagaaaaaaaaatacaagatatactgatggaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458441 lncRNA downstream 7991 13523086 ~ 13523322 (-) True G386763
TU458402 lncRNA downstream 182110 13327325 ~ 13349203 (-) True G386730
TU458377 lncRNA downstream 208321 13293523 ~ 13322992 (-) True G386705
TU458294 lncRNA downstream 323239 13207399 ~ 13208074 (-) True G386644
TU458282 lncRNA downstream 336320 13194788 ~ 13194993 (-) True G386632
TU458494 lncRNA upstream 18268 13671223 ~ 13672140 (-) True G386814
TU458486 lncRNA upstream 23028 13675983 ~ 13680509 (-) True selenow1
TU458536 lncRNA upstream 156646 13809601 ~ 13827854 (-) True G386845
TU458541 lncRNA upstream 200882 13853837 ~ 13854055 (-) True G386849
XR_004577399.1 lncRNA upstream 223062 13876017 ~ 13876806 (-) True LOC117596230
XM_026921500.2 mRNA downstream 14733 13506512 ~ 13516580 (-) True pho
XM_026921501.2 mRNA downstream 27321 13484582 ~ 13503992 (-) True aspa
XM_034300558.1 mRNA downstream 54088 13325782 ~ 13477225 (-) True abr
XM_034300860.1 mRNA upstream 2835 13655790 ~ 13673614 (-) False akap10
XM_034300862.1 mRNA upstream 2835 13655790 ~ 13673614 (-) False akap10
XM_034300861.1 mRNA upstream 2835 13655790 ~ 13673614 (-) False akap10
XM_034300858.1 mRNA upstream 2835 13655790 ~ 13673613 (-) True akap10
XM_034300859.1 mRNA upstream 2835 13655790 ~ 13673612 (-) False akap10
XR_003403212.2 other downstream 1832769 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 1903731 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 1903791 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2447372 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 2925041 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 160278 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 262409 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1263707 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 2724630 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 2778437 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile