RNA id: TU458494


Basic Information

Item Value
RNA id TU458494
length 801
lncRNA type intronic
GC content 0.49
exon number 2
gene id G386814
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13671223 ~ 13672140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cataacattattaccactgacaggtgaagtgaataatattgattatctcattacaatagcacctgtcaagggttgagatatattaggcagcaagtgaccagtcggttcttgaagttgatgtgttggaagcaggaaaaatgagcaagcgtaaggattagagagactttgacaccAGCCTAATTGTGATGTCTAGACgactgagtcagagcatctttaaaacagcaggccttgtggggtgttcccggtatgcaggggttagtacctaccaaaagtggtccaaggaaggaacaccggtgaactagcgacagggttgTGGGTGttcaaggctcactgatgtgcatggggagtgaaggctagcccgtctggtctgatcccacacaagagctactgtagctcagattgctgaaaagttaaagctggctatgatagaaaggtgtcagaacacacagtgcatcgcagcttgctgcgtatggggctgtgtagccacagacctgtcagagtgcccatgctgacccctgtccaccgccaaaagtgcctacaatggacaggtgagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgatacatcacattttcttttacatcatgtggaaggctgggtgcgtgtgcatcgtttacctggggaagagatggcaccagcatgcactatggaagaacgcaagctagggcaggcagtgtgatgctctgggcaatgttctgctgggaaactttgggtcctggcattcacgtggatgctattttgattattcaggaatggttcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458441 lncRNA downstream 147901 13523086 ~ 13523322 (-) True G386763
TU458402 lncRNA downstream 322020 13327325 ~ 13349203 (-) True G386730
TU458377 lncRNA downstream 348231 13293523 ~ 13322992 (-) True G386705
TU458294 lncRNA downstream 463149 13207399 ~ 13208074 (-) True G386644
TU458282 lncRNA downstream 476230 13194788 ~ 13194993 (-) True G386632
TU458486 lncRNA upstream 3843 13675983 ~ 13680509 (-) True selenow1
TU458536 lncRNA upstream 137461 13809601 ~ 13827854 (-) True G386845
TU458541 lncRNA upstream 181697 13853837 ~ 13854055 (-) True G386849
XR_004577399.1 lncRNA upstream 203877 13876017 ~ 13876806 (-) True LOC117596230
TU458563 lncRNA upstream 239122 13911262 ~ 13916801 (-) True G386868
XM_026921466.2 mRNA downstream 18268 13531313 ~ 13652955 (-) True LOC113531016
XM_034300711.1 mRNA downstream 18268 13575436 ~ 13652955 (-) False LOC113531016
XM_026921467.2 mRNA downstream 18268 13592342 ~ 13652955 (-) False LOC113531016
XM_026921500.2 mRNA downstream 154643 13506512 ~ 13516580 (-) True pho
XM_026921501.2 mRNA downstream 167231 13484582 ~ 13503992 (-) True aspa
XM_026921587.2 mRNA upstream 3884 13676024 ~ 13680525 (-) False selenow1
XM_026922154.2 mRNA upstream 11210 13683350 ~ 13695503 (-) False ehd2a
XM_026922153.2 mRNA upstream 11210 13683350 ~ 13695502 (-) True ehd2a
XM_026922155.2 mRNA upstream 11210 13683350 ~ 13695485 (-) False ehd2a
XM_034300596.1 mRNA upstream 11210 13683350 ~ 13695445 (-) False ehd2a
XR_003403212.2 other downstream 1972679 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 2043641 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 2043701 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2587282 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 3064951 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 141093 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 243224 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1244522 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 2705445 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 2759252 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile