zswim7 (zswim7,LOC107712139,LOC107688637,LOC107665024,LOC107740465)


Basic Information

Item Value
gene id zswim7
gene name zswim7,LOC107712139,LOC107688637,LOC107665024,LOC107740465
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13286852 ~ 13320343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922480.2
atcccaaacggCTGCCTAATCTCTCTCTATAGGTACACTCGGTACATCCCGCTGCAGTAGTGGCTTGTACActacatatagtgcactagatatCCGATAGGGACACATTTCAGGTTCTAGGTCAGaataaagctgtttctttacTTACAGGCAGGGTGAAAGTGAGATGAGGGAGTAACTGGTTGTTGTTTCAAGCAGAACATGGCTTCATGTTTGCCTGCTGTCGCTGAACAGCTACTGAAAGACCTTCAGAAGACATATTCAGAGAAGTCCCAAATCCCTGATGAGCTCCTAATAGCGTTGAGGTTTATATTCGGCTCCTGCACTCTGCAGGCATTAGACCTGGTGGATCAGCGCGCTGTAACGTGTGTGTCCTCGCCCAGTGGCCGAGTAGTTTTCCAGGTACTGGGTGGATCAGGACGTCTGTACACTTGCTACACATCATGTCATTATTGCCCCTGTCCagccttctctttctctgtgcttAGGAGAAATGAAAGTCTGGTGtgtaagcACATCTTGGCAGCCTACTTGTGCCAGGCCATGGGATTGTGCCAGCAGGAGCAGGTCCCGGATCAGCAAATGACCCTCATCCTCTCCGGAAGAGCTGAGCTGGATCCATAAAGCAGCATTCTGGATGGAGACACATACTGAATTTTCCTTCTTGTGTGCTAAAGGTGAATAAATTGAGCAGGTGGGGTGTGCACTGCAATAAAAGTTCACATGAAGGGAACTAGGGACGTTCCAGGGCTGGGatttgcatatttcatttttgactgtctcaggttttttttttgcttgtttttttccctgggAGAACAGTATTGCTTTTCCACTTGGCACGGCTCGGTACCTAATCTGAACTCAGGACTGTACACATCGTGGCCAATGGCCTGTGTTTGGTTTCCTGTCTCATAAAATTACCACTGAAGCCAAAAGGAGTTCTCTGGATGTTGTCAGCATGATTATCAAAATACTGCATGAAATCTAAAAAAGGATTTTCTTTGCGATGAAAAACCCCCAACAAAACTATTGAACACAGGAAACTgagtttgttttaatggcagCGAACAACCCAATCACAGCCACATGTGCCAATCCTTTACTATTagtaaaaaacagaaagaagaaagaagactGGATGTCTCTGAATGTAGACTGCAAACTTTGTCGgtcattaaaatgaattgtgCATTTTGTATGGATGGCTCACAGATGCACTTGAAATTCTACCATGTATGCAGGGCACTAGTCAGGGTTTCAGTGACACTGTGGTTTAACCTATGTAGGAATTTGACCTATTTAACCTATAAAGGAATTTGAAAACATTAACTTGTACGATACAGTTGTGGCAGAAAACGtatgtttaataaaagaaaGTAACTTCAGCATGCAGTCGTTACACTGTTAATGAAGGTAGAAAACCTTTTCTCTGTTAGGACTGCTTTTGATCAGTCACTCGTCTGAACTGTTTCCAACTGCACAATGTCCCAGATTTGAACATACTGTTcctgaggaagaagagaaaatatATTCAGAACAGGTATGTAGCTACAGTGTggcacacttggcaataaacacagaaaaacagaaactgcTGAGCTGTGCTCTGCTGAGCCGTGCCAAGCAGCGATGTTCAGCGGACAAGCTATATAGTACTCACTCACTACTTGTACTGAGGATGAGATTGCAATATTGGGTGAAGTTGGGGCAAAAATAATCTTATCCTCACTTCATAGTTCACCGCTTACTGGGAGCATAGGTTCAAAAGTCAGCGTGCACATTTACTGAAAggttcagaaactgctgaaatgGCATGTTGTGTTTTAAGTGAGCAAACGAAACTTGTTCTAAAAAACTTgctcaataaaatgaaatattttatcttTCTTTATCATCATCCAAAGATTATATTttgcaataaaacactttttttgtaCTC
>XM_026922481.2
GCTTCCTCCTGATGAATGTTTGTTTCCTGACGCGGGAAAAACACtcgttttttattttatttatttttatacaaatactTGTATTTTTATGTTCAGTGTTCTTTGGCACAAATAACATATTTCCATGTAGTTTATTTGCAGCAGTGTTTGAGGCAGGGTGAAAGTGAGATGAGGGAGTAACTGGTTGTTGTTTCAAGCAGAACATGGCTTCATGTTTGCCTGCTGTCGCTGAACAGCTACTGAAAGACCTTCAGAAGACATATTCAGAGAAGTCCCAAATCCCTGATGAGCTCCTAATAGCGTTGAGGTTTATATTCGGCTCCTGCACTCTGCAGGCATTAGACCTGGTGGATCAGCGCGCTGTAACGTGTGTGTCCTCGCCCAGTGGCCGAGTAGTTTTCCAGGTACTGGGTGGATCAGGACGTCTGTACACTTGCTACACATCATGTCATTATTGCCCCTGTCCagccttctctttctctgtgcttAGGAGAAATGAAAGTCTGGTGtgtaagcACATCTTGGCAGCCTACTTGTGCCAGGCCATGGGATTGTGCCAGCAGGAGCAGGTCCCGGATCAGCAAATGACCCTCATCCTCTCCGGAAGAGCTGAGCTGGATCCATAAAGCAGCATTCTGGATGGAGACACATACTGAATTTTCCTTCTTGTGTGCTAAAGGTGAATAAATTGAGCAGGTGGGGTGTGCACTGCAATAAAAGTTCACATGAAGGGAACTAGGGACGTTCCAGGGCTGGGatttgcatatttcatttttgactgtctcaggttttttttttgcttgtttttttccctgggAGAACAGTATTGCTTTTCCACTTGGCACGGCTCGGTACCTAATCTGAACTCAGGACTGTACACATCGTGGCCAATGGCCTGTGTTTGGTTTCCTGTCTCATAAAATTACCACTGAAGCCAAAAGGAGTTCTCTGGATGTTGTCAGCATGATTATCAAAATACTGCATGAAATCTAAAAAAGGATTTTCTTTGCGATGAAAAACCCCCAACAAAACTATTGAACACAGGAAACTgagtttgttttaatggcagCGAACAACCCAATCACAGCCACATGTGCCAATCCTTTACTATTagtaaaaaacagaaagaagaaagaagactGGATGTCTCTGAATGTAGACTGCAAACTTTGTCGgtcattaaaatgaattgtgCATTTTGTATGGATGGCTCACAGATGCACTTGAAATTCTACCATGTATGCAGGGCACTAGTCAGGGTTTCAGTGACACTGTGGTTTAACCTATGTAGGAATTTGACCTATTTAACCTATAAAGGAATTTGAAAACATTAACTTGTACGATACAGTTGTGGCAGAAAACGtatgtttaataaaagaaaGTAACTTCAGCATGCAGTCGTTACACTGTTAATGAAGGTAGAAAACCTTTTCTCTGTTAGGACTGCTTTTGATCAGTCACTCGTCTGAACTGTTTCCAACTGCACAATGTCCCAGATTTGAACATACTGTTcctgaggaagaagagaaaatatATTCAGAACAGGTATGTAGCTACAGTGTggcacacttggcaataaacacagaaaaacagaaactgcTGAGCTGTGCTCTGCTGAGCCGTGCCAAGCAGCGATGTTCAGCGGACAAGCTATATAGTACTCACTCACTACTTGTACTGAGGATGAGATTGCAATATTGGGTGAAGTTGGGGCAAAAATAATCTTATCCTCACTTCATAGTTCACCGCTTACTGGGAGCATAGGTTCAAAAGTCAGCGTGCACATTTACTGAAAggttcagaaactgctgaaatgGCATGTTGTGTTTTAAGTGAGCAAACGAAACTTGTTCTAAAAAACTTgctcaataaaatgaaatattttatcttTCTTTATCATCATCCAAAGATTATATTttgcaataaaacactttttttgtaCTC
>XM_026922483.2
atcccaaacggCTGCCTAATCTCTCTCTATAGGTACACTCGGTACATCCCGCTGCAGTAGTGGCTTGTACActacatatagtgcactagatatCCGATAGGGACACATTTCAGGTTCTAGGTCAGaataaagctgtttctttacTTACAGGCAGGGTGAAAGTGAGATGAGGGAGTAACTGGTTGTTGTTTCAAGAACATGGCTTCATGTTTGCCTGCTGTCGCTGAACAGCTACTGAAAGACCTTCAGAAGACATATTCAGAGAAGTCCCAAATCCCTGATGAGCTCCTAATAGCGTTGAGGTTTATATTCGGCTCCTGCACTCTGCAGGCATTAGACCTGGTGGATCAGCGCGCTGTAACGTGTGTGTCCTCGCCCAGTGGCCGAGTAGTTTTCCAGGTACTGGGTGGATCAGGACGTCTGTACACTTGCTACACATCATGTCATTATTGCCCCTGTCCagccttctctttctctgtgcttAGGAGAAATGAAAGTCTGGTGtgtaagcACATCTTGGCAGCCTACTTGTGCCAGGCCATGGGATTGTGCCAGCAGGAGCAGGTCCCGGATCAGCAAATGACCCTCATCCTCTCCGGAAGAGCTGAGCTGGATCCATAAAGCAGCATTCTGGATGGAGACACATACTGAATTTTCCTTCTTGTGTGCTAAAGGTGAATAAATTGAGCAGGTGGGGTGTGCACTGCAATAAAAGTTCACATGAAGGGAACTAGGGACGTTCCAGGGCTGGGatttgcatatttcatttttgactgtctcaggttttttttttgcttgtttttttccctgggAGAACAGTATTGCTTTTCCACTTGGCACGGCTCGGTACCTAATCTGAACTCAGGACTGTACACATCGTGGCCAATGGCCTGTGTTTGGTTTCCTGTCTCATAAAATTACCACTGAAGCCAAAAGGAGTTCTCTGGATGTTGTCAGCATGATTATCAAAATACTGCATGAAATCTAAAAAAGGATTTTCTTTGCGATGAAAAACCCCCAACAAAACTATTGAACACAGGAAACTgagtttgttttaatggcagCGAACAACCCAATCACAGCCACATGTGCCAATCCTTTACTATTagtaaaaaacagaaagaagaaagaagactGGATGTCTCTGAATGTAGACTGCAAACTTTGTCGgtcattaaaatgaattgtgCATTTTGTATGGATGGCTCACAGATGCACTTGAAATTCTACCATGTATGCAGGGCACTAGTCAGGGTTTCAGTGACACTGTGGTTTAACCTATGTAGGAATTTGACCTATTTAACCTATAAAGGAATTTGAAAACATTAACTTGTACGATACAGTTGTGGCAGAAAACGtatgtttaataaaagaaaGTAACTTCAGCATGCAGTCGTTACACTGTTAATGAAGGTAGAAAACCTTTTCTCTGTTAGGACTGCTTTTGATCAGTCACTCGTCTGAACTGTTTCCAACTGCACAATGTCCCAGATTTGAACATACTGTTcctgaggaagaagagaaaatatATTCAGAACAGGTATGTAGCTACAGTGTggcacacttggcaataaacacagaaaaacagaaactgcTGAGCTGTGCTCTGCTGAGCCGTGCCAAGCAGCGATGTTCAGCGGACAAGCTATATAGTACTCACTCACTACTTGTACTGAGGATGAGATTGCAATATTGGGTGAAGTTGGGGCAAAAATAATCTTATCCTCACTTCATAGTTCACCGCTTACTGGGAGCATAGGTTCAAAAGTCAGCGTGCACATTTACTGAAAggttcagaaactgctgaaatgGCATGTTGTGTTTTAAGTGAGCAAACGAAACTTGTTCTAAAAAACTTgctcaataaaatgaaatattttatcttTCTTTATCATCATCCAAAGATTATATTttgcaataaaacactttttttgtaCTC
>XM_026922485.2
GCTTCCTCCTGATGAATGTTTGTTTCCTGACGCGGGAAAAACACtcgttttttattttatttatttttatacaaatactTGTATTTTTATGTTCAGTGTTCTTTGGCACAAATAACATATTTCCATGTAGTTTATTTGCAGCAGTGTTTGAGGCAGGGTGAAAGTGAGATGAGGGAGTAACTGGTTGTTGTTTCAAGAACATGGCTTCATGTTTGCCTGCTGTCGCTGAACAGCTACTGAAAGACCTTCAGAAGACATATTCAGAGAAGTCCCAAATCCCTGATGAGCTCCTAATAGCGTTGAGGTTTATATTCGGCTCCTGCACTCTGCAGGCATTAGACCTGGTGGATCAGCGCGCTGTAACGTGTGTGTCCTCGCCCAGTGGCCGAGTAGTTTTCCAGGTACTGGGTGGATCAGGACGTCTGTACACTTGCTACACATCATGTCATTATTGCCCCTGTCCagccttctctttctctgtgcttAGGAGAAATGAAAGTCTGGTGtgtaagcACATCTTGGCAGCCTACTTGTGCCAGGCCATGGGATTGTGCCAGCAGGAGCAGGTCCCGGATCAGCAAATGACCCTCATCCTCTCCGGAAGAGCTGAGCTGGATCCATAAAGCAGCATTCTGGATGGAGACACATACTGAATTTTCCTTCTTGTGTGCTAAAGGTGAATAAATTGAGCAGGTGGGGTGTGCACTGCAATAAAAGTTCACATGAAGGGAACTAGGGACGTTCCAGGGCTGGGatttgcatatttcatttttgactgtctcaggttttttttttgcttgtttttttccctgggAGAACAGTATTGCTTTTCCACTTGGCACGGCTCGGTACCTAATCTGAACTCAGGACTGTACACATCGTGGCCAATGGCCTGTGTTTGGTTTCCTGTCTCATAAAATTACCACTGAAGCCAAAAGGAGTTCTCTGGATGTTGTCAGCATGATTATCAAAATACTGCATGAAATCTAAAAAAGGATTTTCTTTGCGATGAAAAACCCCCAACAAAACTATTGAACACAGGAAACTgagtttgttttaatggcagCGAACAACCCAATCACAGCCACATGTGCCAATCCTTTACTATTagtaaaaaacagaaagaagaaagaagactGGATGTCTCTGAATGTAGACTGCAAACTTTGTCGgtcattaaaatgaattgtgCATTTTGTATGGATGGCTCACAGATGCACTTGAAATTCTACCATGTATGCAGGGCACTAGTCAGGGTTTCAGTGACACTGTGGTTTAACCTATGTAGGAATTTGACCTATTTAACCTATAAAGGAATTTGAAAACATTAACTTGTACGATACAGTTGTGGCAGAAAACGtatgtttaataaaagaaaGTAACTTCAGCATGCAGTCGTTACACTGTTAATGAAGGTAGAAAACCTTTTCTCTGTTAGGACTGCTTTTGATCAGTCACTCGTCTGAACTGTTTCCAACTGCACAATGTCCCAGATTTGAACATACTGTTcctgaggaagaagagaaaatatATTCAGAACAGGTATGTAGCTACAGTGTggcacacttggcaataaacacagaaaaacagaaactgcTGAGCTGTGCTCTGCTGAGCCGTGCCAAGCAGCGATGTTCAGCGGACAAGCTATATAGTACTCACTCACTACTTGTACTGAGGATGAGATTGCAATATTGGGTGAAGTTGGGGCAAAAATAATCTTATCCTCACTTCATAGTTCACCGCTTACTGGGAGCATAGGTTCAAAAGTCAGCGTGCACATTTACTGAAAggttcagaaactgctgaaatgGCATGTTGTGTTTTAAGTGAGCAAACGAAACTTGTTCTAAAAAACTTgctcaataaaatgaaatattttatcttTCTTTATCATCATCCAAAGATTATATTttgcaataaaacactttttttgtaCTC
>XM_034300619.1
GCTTCCTCCTGATGAATGTTTGTTTCCTGACGCGGGAAAAACACtcgttttttattttatttatttttatacaaatactTGTATTTTTATGTTCAGTGTTCTTTGGCACAAATAACATATTTCCATGTAGTTTATTTGCAGCAGTGTTTGAGGCAGGGTGAAAGTGAGATGAGGGAGTAACTGGTTGTTGTTTCAAGACCTGTACATCTCTCAGCAGAACATGGCTTCATGTTTGCCTGCTGTCGCTGAACAGCTACTGAAAGACCTTCAGAAGACATATTCAGAGAAGTCCCAAATCCCTGATGAGCTCCTAATAGCGTTGAGGTTTATATTCGGCTCCTGCACTCTGCAGGCATTAGACCTGGTGGATCAGCGCGCTGTAACGTGTGTGTCCTCGCCCAGTGGCCGAGTAGTTTTCCAGGTACTGGGTGGATCAGGACGTCTGTACACTTGCTACACATCATGTCATTATTGCCCCTGTCCagccttctctttctctgtgcttAGGAGAAATGAAAGTCTGGTGtgtaagcACATCTTGGCAGCCTACTTGTGCCAGGCCATGGGATTGTGCCAGCAGGAGCAGGTCCCGGATCAGCAAATGACCCTCATCCTCTCCGGAAGAGCTGAGCTGGATCCATAAAGCAGCATTCTGGATGGAGACACATACTGAATTTTCCTTCTTGTGTGCTAAAGGTGAATAAATTGAGCAGGTGGGGTGTGCACTGCAATAAAAGTTCACATGAAGGGAACTAGGGACGTTCCAGGGCTGGGatttgcatatttcatttttgactgtctcaggttttttttttgcttgtttttttccctgggAGAACAGTATTGCTTTTCCACTTGGCACGGCTCGGTACCTAATCTGAACTCAGGACTGTACACATCGTGGCCAATGGCCTGTGTTTGGTTTCCTGTCTCATAAAATTACCACTGAAGCCAAAAGGAGTTCTCTGGATGTTGTCAGCATGATTATCAAAATACTGCATGAAATCTAAAAAAGGATTTTCTTTGCGATGAAAAACCCCCAACAAAACTATTGAACACAGGAAACTgagtttgttttaatggcagCGAACAACCCAATCACAGCCACATGTGCCAATCCTTTACTATTagtaaaaaacagaaagaagaaagaagactGGATGTCTCTGAATGTAGACTGCAAACTTTGTCGgtcattaaaatgaattgtgCATTTTGTATGGATGGCTCACAGATGCACTTGAAATTCTACCATGTATGCAGGGCACTAGTCAGGGTTTCAGTGACACTGTGGTTTAACCTATGTAGGAATTTGACCTATTTAACCTATAAAGGAATTTGAAAACATTAACTTGTACGATACAGTTGTGGCAGAAAACGtatgtttaataaaagaaaGTAACTTCAGCATGCAGTCGTTACACTGTTAATGAAGGTAGAAAACCTTTTCTCTGTTAGGACTGCTTTTGATCAGTCACTCGTCTGAACTGTTTCCAACTGCACAATGTCCCAGATTTGAACATACTGTTcctgaggaagaagagaaaatatATTCAGAACAGGTATGTAGCTACAGTGTggcacacttggcaataaacacagaaaaacagaaactgcTGAGCTGTGCTCTGCTGAGCCGTGCCAAGCAGCGATGTTCAGCGGACAAGCTATATAGTACTCACTCACTACTTGTACTGAGGATGAGATTGCAATATTGGGTGAAGTTGGGGCAAAAATAATCTTATCCTCACTTCATAGTTCACCGCTTACTGGGAGCATAGGTTCAAAAGTCAGCGTGCACATTTACTGAAAggttcagaaactgctgaaatgGCATGTTGTGTTTTAAGTGAGCAAACGAAACTTGTTCTAAAAAACTTgctcaataaaatgaaatattttatcttTCTTTATCATCATCCAAAGATTATATTttgcaataaaacactttttttgtaCTC

Function

symbol description
zswim7 Predicted to enable zinc ion binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of Shu complex. Orthologous to human ZSWIM7 (zinc finger SWIM-type containing 7).

NR:

description
PREDICTED: zinc finger SWIM domain-containing protein 7

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922480.2 False 1942 mRNA 0.42 6 13286852 13320097
XM_026922481.2 False 1944 mRNA 0.41 7 13286852 13320343
XM_026922483.2 False 1939 mRNA 0.42 6 13286852 13320097
XM_026922485.2 False 1941 mRNA 0.41 7 13286852 13320343
XM_034300619.1 True 1961 mRNA 0.41 7 13286852 13320343

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-72a4.1 NA coding downstream 107225 13162472 ~ 13179627 (-)
dab2ipb dab2ip,LOC108259889 coding downstream 130129 13023617 ~ 13156723 (-)
si:dkey-34e4.1 NA coding downstream 296762 12934134 ~ 12990090 (-)
lamc3 lamc3,LOC107570860 coding downstream 820870 12344518 ~ 12465982 (-)
aif1l aif1l,LOC107570864 coding downstream 945256 12320637 ~ 12341596 (-)
nanos2 NA coding upstream 902 13321245 ~ 13322461 (-)
abr abr,si:ch211-253h3.1,LOC103375456,LOC107731041,LOC107688618,LOC107712163 coding upstream 5439 13325782 ~ 13477225 (-)
aspa aspa coding upstream 164239 13484582 ~ 13503992 (-)
pho NA coding upstream 186169 13506512 ~ 13516580 (-)
LOC113531016 LOC108260420,LOC108427286,LOC106567973,LOC103045102,LOC107712159,LOC106534416 coding upstream 210970 13531313 ~ 13652955 (-)
G386644 NA non-coding downstream 78778 13207399 ~ 13208074 (-)
G386632 NA non-coding downstream 91859 13194788 ~ 13194993 (-)
G386630 NA non-coding downstream 92650 13193989 ~ 13194202 (-)
G385758 NA non-coding downstream 459329 12826786 ~ 12827523 (-)
G385692 NA non-coding downstream 568263 12717209 ~ 12718589 (-)
G386730 NA non-coding upstream 6982 13327325 ~ 13349203 (-)
G386763 NA non-coding upstream 202743 13523086 ~ 13523322 (-)
G386814 NA non-coding upstream 350880 13671223 ~ 13672140 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 489258 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 533494 13853837 ~ 13854055 (-)
garnl3 garnl3,LOC107700942 other downstream 395557 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 1588308 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 1659166 11546309 ~ 11627686 (-)
G384960 NA other downstream 2202911 11078712 ~ 11083941 (-)
G384811 NA other downstream 2680580 10605990 ~ 10606272 (-)
selenow1 LOC103044489 other upstream 295779 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 1596319 14916662 ~ 14923390 (-)
nrgna NA other upstream 1698550 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2561995 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 3043151 16363494 ~ 16380787 (-)

Expression


Co-expression Network