lamc3 (lamc3,LOC107570860)


Basic Information

Item Value
gene id lamc3
gene name lamc3,LOC107570860
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12344518 ~ 12465982 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922053.2
gtttatgtgtgtgtgtgtgtcccattGAATGTGTTAGATGGGAAACATGTTTTGAGTCTTcaggaaagaaaggaggaatGAAGATTGCTCCACATGAGAGAGAAACGTTTAAAACTTTTCACAACTTTTATGTTCCTATTAcatgcatgtgagtgtgtggagcTTCTTTTgtattcctgaaaaaaaaaaaaagacacagtttGTGAACTGCATGGCACTACTCATTTCTatgtaatgcatgttttttcagAAACGTATTTAGTCTTGTCACTGATTCTAACATTGCGGTTAAATGCTCAAGCATGCATGTGCgtacatctgagtgtgtgtctgtattaataaatatgcTGTTAATAATCAGATATTCAGTTTCATGTGTTTGAGGCAGgctttccttttcatttcttttcccaTTTCTTATGTCCACtaaactttactttacttacagtagTAATTTACTTTAGCTTATTTTACCTCTTTCGCTGCTGCATAAAACATGTATTCCACTACATTTTCCTTTGCTGTCTCcatcctttttcttttattcctctcatattCATATGTTTTTGCTGGGATGGACTCCTGCCACGATGAGGAAGGCACACCAAGTGTCTGCATGCCTAAATTTGAGAACGCGGCTTTCAACCGTACCATAATTGTTTCAAACGTGTGCGGCTCTCCTCCTGAGGACTACTGCATGCAAACGGGTTCCACACGCTCCTGTCGGCATTGTGACGCTTCAGACTTTGAGACAAACCACAATGCCACCTACCTGAATGACTTCCACAGTGATGAGGAACCTACCTGGTGGCAAAGCCAGTCCATGTTCTACGGAGTGCAGTACCCCAACTCTGTCAATCTAACACTACACTTAGGTAAAGCCTATGAGATCACATACGTCCGGTTGAAGTTCTACACCAGCCGTCCAGAGAGTTTTGCCATTTACAAACGTACAAATGAGACAGCATCTTGGCAGCCATACCAGTACTACAGTGCATCCTGCCGTAAGACCTATGGGAGGGACTCCAAGGGCTTCATCCGACCTGGAGACGAGGAGAGAACGGCACTCTGTACGGATGAGTTTAGCGACATCTCTCCACTAACAGGAGGAAATGTAGCTTTTTCTACCCTTGAAGGAAGACCCAGTGCCTACAACTTTGACCAGAGCCCAGTGCTACAGGAATGGGTGACAGCTACAGACCTACTGATCTCTTTGAACAGGCTGAACACCTTTGGAGATGAGTTCTTCAAGGATGCCAAAGTGCTACGCTCCTACTTTTATGCCATCTCTGACTTTTCTGTGGGGGGCAGATGCAAGTGTAATGGGCATGCCAGCGAATGTGTGCCAAATGAGCAAGGccgtttggtgtgtgtgtgtgagcactacACTGCTGGGACGGATTGCCAACATTGTGCCACGTTCTACCGGGACCGTCCGTGGGCTCGTGCCACTGCAGACTCTGCCAACCAGTGTGTTAAGTGTAACTGCAGTGGCCGTGCGGACGAGTGCGTGTTCGATGCGGAGCAGTACCGCAGTACAGGTAGTGGTGGACGGTGTATTGGCTGTAGGGACAACACAGCAGGGCCGCATTGCGAACGGTGCAGAGAAAACTTCTACAGATCGTCTCCACTGCTTCCCTGCAACAACTGCAGCTGTAACACTATGGGCTCTGTGAGTCTGCAGTGTGATGAGGAaggtgtgtgtctctgcagacTGAGTGTGATGGGGGTAAAGTGTGACGTCTGCAGACCTGGCTTCCACTCCCTCGGACCAGGGGGCTGCAGgttgtgtgagtgtgatgaaaGGGGCAGTGTAGGTGTGTGCTCAGCTGGAGATGGAAGGTGCCACTGCAAATCCAACGTGGAAGGACACTCGTGTGGCAGGTGCAAACCTGGCTCCTTCAACCTCCAACTCGATAACCCACATGGCTGTCAGATGTGCTTCTGCTTTGGCCACTCACTAGCATGTTCATCCTCCAATCAGCATGTGACCTTCAACATTACCTCCAACTTCCTTGAGGACACCGATGGCTGGCTTGGTGAGTTCTCAGGACATCAGGAAGCCTCCTTGATATGGAAAGAGGGAGAAGTCTACCTGCTACCTTACAGTGAGGAGGACGTCGGATACTATAAAGCACCAGCAAAGTTTCTGGGAAACCAACTGCTGAGTTATGGTCAGCACCTTACCTTGTCATTTACGGCTGAATCAAGTGAGCTGTTGCCCAAGATTGTGACTGTGGCTCTTGAAGGATCTGGACTGTCAGTCAGTGCCAACTTGTTTTCGAAGCAGTATGTGGACAGTCAGCCTAGCCACACCCCTCGTAACATCTTCACACTCAGGTTAACCGAAACAGAGGTTTATCCATCACTCACTCCATTTGAGTTTCGACGTTTGCTCAACAACTTGACTGCGCTACACATCAGCAATGTGGGAGGACAAAACTATACATCCCAGCTGTCTGGCGTGACATTGACCTCTGCGACACTGGCTGAGCCCTACTCCGACATCCACCTTGCCCCACCTGCCCCCTGGGTTGAGGTGTGTGCATGCCCACCAGGATTCATGGGACAATTTTGCGAGCTGTGTGCACCAGGTTTTACCCGAGACAGTCCTAACGGCGGGCCGTATTCTCCCTGTGTGCCATGTAACTGTAACCAGCATGGGACGTGCCATCCAGAAACAGGTGTCTGTGACTGCACAGACTTCACAACCGGTCCCTCTTGTGAGCGTTGTCAGGATGGTTACTATGGGAACGCACTGACTGGCAGCCCAGGAGACTGTGCGCCCTGCCCCTGCCCAGGCCGTACCACTTGTGCCCAGATGCCAGAGACAGGGGAGGTTGTATGTACCAATTGCCCAGCAGGACAGAGGGGAATCAGATGCGAGTTATGTGAAGACGGGTTCTACGGCGACCCACTTGGCTGGCAAGGCGAGGTGCGGCTGTGTGTAAGGTGCGAGTGTAACGAGAACACAGACCCCAATGCTGTAGGTGTGTGCGATCACGTGACTGGACGCTGCCTCAAATGTTTAGGACACACAGATGGGGACCATTGTGAAAAATGCCAAAGCGGTTACTATGGAAATGCTCTGGATAGGAGTCTGAGGCCTTCCCAAAAGTGTCTGCCCTGTCTCTGTAACCCGGCTGGCACTTTGGGGTCAGTGAATGAGTGTGATCCTCACACAGGAAGATGTTTGTGCCTGAGGCACGTGACAGGAAGAGACTGTGGACAGTGTGAGTTCGGCTACTTCAACCTGCGGCCAGGGCTGGGTTGTGACAGCTGTAACTGCAATCCCATTGGCTCCCCATCCCTAGCGTGTCACCCAATCACAGGCCAGTGCACGTGTCGGACaggtatcaagggcaaaatgTGTGATGCCTGTCAAATGGGattctttggcttttcctcCAGAGGATGCAGAGCCTGTAATTGTGACCCAATGGGATCAGCGTCCATGCAGTGCCACACCAACGGGACATGTCCGTGTCGCCAAGGTTTTGTGGGTTATAAGTGTGACAAGTGTGAGCTGAACCACTACCAAAACCCCTTGACCCACCAGTGTGAGGAGTGCCCTGTGTGCTACAGTCTCATCAGAGACcaggtgACTAAACTCAAAAGCCAACTGCACAGTTTAGAGAGACTGCTTTCCATCTATGACTGCAAGAACTTCAGGCACAGAATCTACGTGCGTCCGAATCACGTGCGCCAGCATCACAGGCTCGAGAATCACTTGCACGAGCATCAAGGCGAGGATTACTTACCCAATGCGCTGGAGGAGTTTCTGGCCATCCAAGagGCACGAGAAGCTTTCATCAGCCAGTTCACACAGCTGGAAACATCTGCACAAGCCCTACAGCTGCAGCTGCACGACTTTGCCAGTATAATGAACTGCAGCCTCCTGAAGGAAGAAGGAAGCACAAGCAGTGAGGAAGAGAATAGGACGCCCAAGGCAACGAACGAGTGCAAAGCTCTCGTGGAGACGTTTGCTGCTGTCACAGAATCACAGGCACAGCTTCAGGAGATGACCTCGGACCTTAACAGTCTAGTAATCCCATTCATTATCCCGAAAGGACCGACAGAGTGGAACGCCCTTGTGAATGAATCGGAAGCTTTGGTGAAGAGtcaTAAAGAAATGGCTGCTCATATCGAAGGGCTAGCTGGAGAGGCTTTAAAAGTGTCTAACAAAACTTATTCCGTACTGCTGGATCTGCTGGAGGATAACTCAACAGAGCGCCATTTACAAGCGCTTACTGAGCGgCTATCAGAGATGCAGCAGCTGAAAGAGAATCTCACACGACAGGCGAATGAGACCCACGCTGCCTACCTGTCAATGGAGGAGCTGAACAAAGAAGCAGAGGCCATTTTACAAAACGTTACCTCCACCCTCCCCAACCAGCCCACGGACATAAATAACAACCTCCTGAACACAACCGCCGCAGAGGAGCTCAATGAAGCAGATAATACCATAGCACAGGATACACAGCTGATCCAGAGGCTAGACCTGGCCAACAGGACGGCTGAGTTGGATTTGCTGATCCAGTCCAAGCAACAGTTGCTAAATAAGAGCAGAGAGGAGTTAGAACCACGGCTGGAGAATGCACGCAACAATCTAAACACCACTGAAGAGTTCCAGCAGCTGACAGCATTCGCCCAGGGGCTCAGAGAGACAGCCCTTACTTCAGTAGTGGAAGGAAAGAAGATAGAATCAGAGGCATTTTCTCTCCACAGACATGCAGAAGGCTTAGAGAAGGAGTGGCCTGTTGTGCGCACTCAGACCCGGGCAGCTCTGAAGCGAGAGGGCGTTGTGGAGGAGAAGATCCTGACGGAGGTGAAGAAGAAGGTGAGGCATGCCGAGAGAGTGCTCAGACCTGCGCTGGAGAATGCGACGCAAGCAAGAGACACAGCGACGCAGGCTCAGAAGACAGCGAATGCTATAGCTAAGGATGCTAAGGCGTCTTTGTCCCGGGGAAAGCAGACGAGGAAGGTGTCTGTTCAACTGAAGACAGCCGTGAATGCAGCCGTGCAGCAGCTGACAGAGCAGGAGAATTTAGCTGCTCATGTGGCAGGAGACGTGCAAGACGAGGCTGATGTTTCTTTAAAGGGAGTGATGGGTAGCATGGAGTCAGCCAAGAGCCAGCTGGAGGGTTTCACACACATGCTAGCCGAGCTGCTTGGTCAAATAGAAAGGAATACAGACGTAGAGAAGTACGACCGCGTGCTGAACGAGACAGCCTCTCGTCTCAAGGTTCTCCGGGGCAGTGTGGAGAGCCCGGCGCTGAACAGGAAGTTCCAGATGCTCCTTGGAGCCACTGAGGATCAACAAAAACAGCTGATGGAGCTTGAAAAGAGTCTGCAGGACATCCGAGAAGAGCGGGACAGCCTGGCTGATATCGCCCAGAATCTGCCGAAAACATGCCCAGAGAGGAGCTAAAGAGAAGGAACACAAGAGGATAaggaatataaacaatatatttgGCATACTCTTTcttaaatatttgatttaaatatattagCTGGATGTAGAGGGAGTGGGAGGGAGGTGTGAGAACGAGGATTCTTCATGCAGTTCCACATGTACAAGCTCTAATAGAAGATTGGTTTCTgacattacatatacagtacaaccATACACATTTGAATTGCGGCGAATGTATTATAAACCATGCTGAGGTCCAATAAAAGAGTTCAAcgtc

Function

symbol description
lamc3 Acts upstream of or within motor neuron axon guidance. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in several structures, including fin bud; myoseptum; nervous system; optic fissure; and vasculature. Orthologous to human LAMC3 (laminin subunit gamma 3).

NR:

description
laminin subunit gamma-3-like isoform X2

GO: NA

KEGG:

id description
K06247 LAMC3; laminin, gamma 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922053.2 True 5693 mRNA 0.50 28 12344518 12465982

Neighbor

gene id symbol gene type direction distance location
aif1l aif1l,LOC107570864 coding downstream 2922 12320637 ~ 12341596 (-)
gfm2 gfm2 coding downstream 34898 12285856 ~ 12309620 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding downstream 96953 12236141 ~ 12247565 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding downstream 124484 12219094 ~ 12220034 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding downstream 324563 12011209 ~ 12019955 (-)
si:dkey-34e4.1 NA coding upstream 468152 12934134 ~ 12990090 (-)
dab2ipb dab2ip,LOC108259889 coding upstream 557635 13023617 ~ 13156723 (-)
si:dkeyp-72a4.1 NA coding upstream 696490 13162472 ~ 13179627 (-)
zswim7 zswim7,LOC107712139,LOC107688637,LOC107665024,LOC107740465 coding upstream 820870 13286852 ~ 13320343 (-)
nanos2 NA coding upstream 855263 13321245 ~ 13322461 (-)
G385574 NA non-coding downstream 1887 12342422 ~ 12342631 (-)
G385292 btf3,LOC107655933 non-coding downstream 334295 11984134 ~ 12010223 (-)
G385272 NA non-coding downstream 446128 11895557 ~ 11898390 (-)
G385229 NA non-coding downstream 509510 11833838 ~ 11835008 (-)
G385212 NA non-coding downstream 639761 11704556 ~ 11704757 (-)
G385589 NA non-coding upstream 3247 12469229 ~ 12469882 (-)
G385590 NA non-coding upstream 3958 12469940 ~ 12470174 (-)
G385595 NA non-coding upstream 81824 12547806 ~ 12548129 (-)
G385692 NA non-coding upstream 251227 12717209 ~ 12718589 (-)
G385758 NA non-coding upstream 360804 12826786 ~ 12827523 (-)
LOC113531030 NA other downstream 645974 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 716832 11546309 ~ 11627686 (-)
G384960 NA other downstream 1260577 11078712 ~ 11083941 (-)
G384811 NA other downstream 1738246 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 3089073 9240716 ~ 9255445 (-)
garnl3 garnl3,LOC107700942 other upstream 341219 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 1150140 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 2450680 14916662 ~ 14923390 (-)
nrgna NA other upstream 2552911 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 3416356 15882338 ~ 15888059 (-)

Expression


Co-expression Network