G385229


Basic Information

Item Value
gene id G385229
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11833838 ~ 11835008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456722
atatattacacatttattacagaCATTGAAATCATGAGAAAACAAAGTggtaaatttgtaaaaattgaaaaaaatcattttcacagATCATTTAACACATCCATGAACATGAGACCAAAAGGAGCAAGAGACAATATTTGAGAAGCTCCAAAATGCCTTCACACATTTATCTGATGGTTGTAGAGGCAGCAAGAACCAGCTTGCTAAAATACACAATCAGACATTTAGTTATACTGGACAGAAAAAGTGTCACACAGTTCAGTTTTGACCCTAATGTCCACTGGTTAATATCTGCCTCCACACTAAACGCCCAAtgccattttattatttttttaatacagttacatacatcttAAACATTTCCAATAAAACAGTAAAGATTAGGAATTTAAAAACTCTGCCTAGTTACGTCATAAAAATGATCCTGTGGAAAAAGATACTGTCGTTAAAAAACCTAAAACTTTCCTAGAatgttacacatttacacattacacatttacacatttaatttttttagtacaTATCAAACATTCCTTTGTATTATTTAGGGTATATCTATCTCCATCTTCCCACTGGTTAAAGTAGCCCTTAAGACAATTGACCCTTAAGAGAAGGATATAAGGCACAGagccattatttaaaaaaaagaaaaaaaaaaaaaagaaaaacaaaacaaaccctgTGTTTAGCCCATTAAAGCACTTTGGATCTGTTTAGAAGTTCTGAATGGTTAGTTACTTAGACATGCAACAGGCATGCCCTGTGTCTataggaaacaagtaggtagtCCAAGTCTGAAGCAATCTTAAATTGCTAAGTTTTggtagaaaataatgaaattgctGAAATTTTGGtactatattaatatataatttaatgttacagtagaatattactgtaatattaaaaaataataaattaatatcaaaAATTTGGAATAGGGGAATCCATTCTCATTTCCACTATAATTTCTCAGTGCCTTTGTGTGTATTGGGCCATAGGTCATATTTGGGTCATCTAGGTCCGAGTCATTTAGTAATTCATTGCAAGTAGGATTACCCAACTACAGGGAATATCCAAAGATAAAGATCAGCAAGAACATGTTCAGCTGGTTAAAGGGCATCAGATCATcagttctgtaataaatattcagaacacaccacaccaTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456722 True 1171 lncRNA 0.32 1 11833838 11835008

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding downstream 380919 11355674 ~ 11452919 (-)
LOC113523726 NA coding downstream 682814 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 851924 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 1050848 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 1166716 10558236 ~ 10667122 (-)
foxd1 foxd1 coding upstream 155069 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 176201 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 384086 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 401133 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 450848 12285856 ~ 12309620 (-)
G385212 NA non-coding downstream 129081 11704556 ~ 11704757 (-)
G385206 NA non-coding downstream 159283 11672860 ~ 11674555 (-)
G385200 NA non-coding downstream 186694 11645885 ~ 11647144 (-)
G385177 NA non-coding downstream 269275 11563608 ~ 11564563 (-)
G385170 NA non-coding downstream 287897 11544646 ~ 11545941 (-)
G385272 NA non-coding upstream 60549 11895557 ~ 11898390 (-)
G385292 btf3,LOC107655933 non-coding upstream 149126 11984134 ~ 12010223 (-)
G385574 NA non-coding upstream 507414 12342422 ~ 12342631 (-)
G385589 NA non-coding upstream 634221 12469229 ~ 12469882 (-)
G385590 NA non-coding upstream 634932 12469940 ~ 12470174 (-)
LOC113531030 NA other downstream 135294 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 206152 11546309 ~ 11627686 (-)
G384960 NA other downstream 749897 11078712 ~ 11083941 (-)
G384811 NA other downstream 1227566 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2578393 9240716 ~ 9255445 (-)
garnl3 garnl3,LOC107700942 other upstream 972193 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 1781114 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3081654 14916662 ~ 14923390 (-)
nrgna NA other upstream 3183885 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 4047330 15882338 ~ 15888059 (-)

Expression


Co-expression Network