G385177


Basic Information

Item Value
gene id G385177
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11563608 ~ 11564563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456646
CTCAAAAATTGCACTCCCTATGCAGACCTTGGGTTCAGCTATTCATTTCTTCAGTTTCCCAGctctacaaataaaacaactgtgggttttctggaaaaaaaaaagtcattagaTGATACCAGGGCCTGTAATACCATTTATATAAAACAGATTTACTGTGTATCAATAAACAATCCTTGATGCTCACTTATCATTGTACTCATACAGTAGCTGAAATTATATTTAGGAATCCTCCTCAAAGATCCTGAGATTCATTTTTAGGGAATCTCCTTTAAGCTCCtacaaacaggacaaaaacatcaAAGGTATGTCTATTAGGAGTGAAATAAATTATCTGGTAAATAGCTCAAGATGCTCTACATGCAAATTTATTAACCCACTCATTAAAAGCACAAAGCATTAAGGGCCACTTTCATCACACTACTCTTTGTGCTATAACAcaggatttgtttattttatcttcAAGAGTCTTGGCTGATTTTTTATTAAGTACCTTCATACCATAAGAATGAaaattttgttttctcttttttttggaaagctgCATCCCCTCTAACCTTATTTATTGTGCGCGAGGTTGCATGCAGTAACCGAAGGTGAGATCacagagttgtccagggagattgcaagatcctgacacggggatgaatcacctgggatgaacagcagAGTAAtgtagagggagaacagaagaggaccaagtactgagccttgtgggacaccagtggagagtctgcagggagcagatgtggatcccctccatgtcacctgatatgaccgaccttccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456646 True 789 lncRNA 0.39 2 11563608 11564563

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding downstream 110689 11355674 ~ 11452919 (-)
LOC113523726 NA coding downstream 412584 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 581694 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 780618 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 896486 10558236 ~ 10667122 (-)
foxd1 foxd1 coding upstream 425514 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 446646 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 654531 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 671578 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 721293 12285856 ~ 12309620 (-)
G385170 NA non-coding downstream 17667 11544646 ~ 11545941 (-)
G385171 NA non-coding downstream 19048 11541789 ~ 11544560 (-)
G385109 NA non-coding downstream 117081 11445861 ~ 11446527 (-)
G385091 NA non-coding downstream 199816 11361533 ~ 11363792 (-)
G385067 NA non-coding downstream 278053 11285329 ~ 11285555 (-)
G385200 NA non-coding upstream 81322 11645885 ~ 11647144 (-)
G385206 NA non-coding upstream 108297 11672860 ~ 11674555 (-)
G385212 NA non-coding upstream 139993 11704556 ~ 11704757 (-)
G385229 NA non-coding upstream 269275 11833838 ~ 11835008 (-)
G385272 NA non-coding upstream 330994 11895557 ~ 11898390 (-)
G384960 NA other downstream 479667 11078712 ~ 11083941 (-)
G384811 NA other downstream 957336 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2308163 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2479524 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 2493349 9020715 ~ 9070259 (-)
LOC113531030 NA other upstream 126671 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1242638 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2051559 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3352099 14916662 ~ 14923390 (-)
nrgna NA other upstream 3454330 15018893 ~ 15026869 (-)

Expression


Co-expression Network