RNA id: XM_026922483.2


Basic Information

Item Value
RNA id XM_026922483.2
length 1939
RNA type mRNA
GC content 0.42
exon number 6
gene id zswim7
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13286852 ~ 13320343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcccaaacggCTGCCTAATCTCTCTCTATAGGTACACTCGGTACATCCCGCTGCAGTAGTGGCTTGTACActacatatagtgcactagatatCCGATAGGGACACATTTCAGGTTCTAGGTCAGaataaagctgtttctttacTTACAGGCAGGGTGAAAGTGAGATGAGGGAGTAACTGGTTGTTGTTTCAAGAACATGGCTTCATGTTTGCCTGCTGTCGCTGAACAGCTACTGAAAGACCTTCAGAAGACATATTCAGAGAAGTCCCAAATCCCTGATGAGCTCCTAATAGCGTTGAGGTTTATATTCGGCTCCTGCACTCTGCAGGCATTAGACCTGGTGGATCAGCGCGCTGTAACGTGTGTGTCCTCGCCCAGTGGCCGAGTAGTTTTCCAGGTACTGGGTGGATCAGGACGTCTGTACACTTGCTACACATCATGTCATTATTGCCCCTGTCCagccttctctttctctgtgcttAGGAGAAATGAAAGTCTGGTGtgtaagcACATCTTGGCAGCCTACTTGTGCCAGGCCATGGGATTGTGCCAGCAGGAGCAGGTCCCGGATCAGCAAATGACCCTCATCCTCTCCGGAAGAGCTGAGCTGGATCCATAAAGCAGCATTCTGGATGGAGACACATACTGAATTTTCCTTCTTGTGTGCTAAAGGTGAATAAATTGAGCAGGTGGGGTGTGCACTGCAATAAAAGTTCACATGAAGGGAACTAGGGACGTTCCAGGGCTGGGatttgcatatttcatttttgactgtctcaggttttttttttgcttgtttttttccctgggAGAACAGTATTGCTTTTCCACTTGGCACGGCTCGGTACCTAATCTGAACTCAGGACTGTACACATCGTGGCCAATGGCCTGTGTTTGGTTTCCTGTCTCATAAAATTACCACTGAAGCCAAAAGGAGTTCTCTGGATGTTGTCAGCATGATTATCAAAATACTGCATGAAATCTAAAAAAGGATTTTCTTTGCGATGAAAAACCCCCAACAAAACTATTGAACACAGGAAACTgagtttgttttaatggcagCGAACAACCCAATCACAGCCACATGTGCCAATCCTTTACTATTagtaaaaaacagaaagaagaaagaagactGGATGTCTCTGAATGTAGACTGCAAACTTTGTCGgtcattaaaatgaattgtgCATTTTGTATGGATGGCTCACAGATGCACTTGAAATTCTACCATGTATGCAGGGCACTAGTCAGGGTTTCAGTGACACTGTGGTTTAACCTATGTAGGAATTTGACCTATTTAACCTATAAAGGAATTTGAAAACATTAACTTGTACGATACAGTTGTGGCAGAAAACGtatgtttaataaaagaaaGTAACTTCAGCATGCAGTCGTTACACTGTTAATGAAGGTAGAAAACCTTTTCTCTGTTAGGACTGCTTTTGATCAGTCACTCGTCTGAACTGTTTCCAACTGCACAATGTCCCAGATTTGAACATACTGTTcctgaggaagaagagaaaatatATTCAGAACAGGTATGTAGCTACAGTGTggcacacttggcaataaacacagaaaaacagaaactgcTGAGCTGTGCTCTGCTGAGCCGTGCCAAGCAGCGATGTTCAGCGGACAAGCTATATAGTACTCACTCACTACTTGTACTGAGGATGAGATTGCAATATTGGGTGAAGTTGGGGCAAAAATAATCTTATCCTCACTTCATAGTTCACCGCTTACTGGGAGCATAGGTTCAAAAGTCAGCGTGCACATTTACTGAAAggttcagaaactgctgaaatgGCATGTTGTGTTTTAAGTGAGCAAACGAAACTTGTTCTAAAAAACTTgctcaataaaatgaaatattttatcttTCTTTATCATCATCCAAAGATTATATTttgcaataaaacactttttttgtaCTC

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458294 lncRNA downstream 78778 13207399 ~ 13208074 (-) True G386644
TU458282 lncRNA downstream 91859 13194788 ~ 13194993 (-) True G386632
TU458280 lncRNA downstream 92650 13193989 ~ 13194202 (-) True G386630
TU457310 lncRNA downstream 459329 12826786 ~ 12827523 (-) True G385758
TU457304 lncRNA downstream 477806 12807330 ~ 12809046 (-) False garnl3
TU458402 lncRNA upstream 7228 13327325 ~ 13349203 (-) True G386730
TU458441 lncRNA upstream 202989 13523086 ~ 13523322 (-) True G386763
TU458487 lncRNA upstream 296025 13616122 ~ 13680509 (-) False selenow1
TU458494 lncRNA upstream 351126 13671223 ~ 13672140 (-) True G386814
TU458486 lncRNA upstream 355886 13675983 ~ 13680509 (-) True selenow1
XM_034300957.1 mRNA downstream 107225 13162472 ~ 13179627 (-) True si:dkeyp-72a4.1
XM_026922047.2 mRNA downstream 130129 13024349 ~ 13156723 (-) False dab2ipb
XM_026922048.2 mRNA downstream 141116 13024349 ~ 13145736 (-) False dab2ipb
XM_026922046.2 mRNA downstream 172654 13023617 ~ 13114198 (-) True dab2ipb
XM_026922235.2 mRNA upstream 1148 13321245 ~ 13322461 (-) True nanos2
XM_034300558.1 mRNA upstream 5685 13325782 ~ 13477225 (-) True abr
XM_034300559.1 mRNA upstream 5685 13325782 ~ 13441964 (-) False abr
XM_034300560.1 mRNA upstream 5685 13325782 ~ 13416353 (-) False abr
XM_034300561.1 mRNA upstream 5685 13325782 ~ 13344284 (-) False abr
XR_003403212.2 other downstream 1588308 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 1659270 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 1659330 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2202911 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 2680580 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 493136 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 595267 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1596565 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 3057488 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 3111295 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile