RNA id: XM_026922047.2


Basic Information

Item Value
RNA id XM_026922047.2
length 3590
RNA type mRNA
GC content 0.54
exon number 16
gene id dab2ipb
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13023617 ~ 13156723 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCCTCCTCGGAGCTGTACTCATGTGGATGTAGAGCGACAGTTGGGGAAAACACACTGGCTCCTGAGACACTTTTCACTTTCCCCCCGGCCTCTTTTTTCCAACTCTGTTCATCTCAGCAGCTATACAGGAGTCGCATTTCATCCGTATGGAGTTGGATGCAGGTCTCGAGCCTGAGGGTCAATCTGATTCTCCTCCAGAGAGAACAGGACGGAGGCGGAGCATGCCCGGCTCCGCCCCTGATAAAACCCCGGCCACAATGGAACCCACAGCTGCTGCCACGCCCTTTAGAGTTACAGGTTTCCTGAGTCGCAGGTTAAAGGGATCAATAAAGAGGACTAAGAGTCAACCCAAGCTGGACAGGAACAGCAGTTTCAAACACATCCTGCCTGGCTTCAGACCTGTAGATAATGACAGATCTCATCTGATGCCGAGACTGAAAGAATCGCGCTCTCACGAGTCGTTGCTCAGTCCCAGTAGTGCAGTGGAAGCTCTGGACCTCAGCATGGAGGAGGAGGTCCTCATCAAACCCGTACACAGCTCCATCCTGGGTCAGGACTACTGCTTTGAGGTGAGCACCTCAACAGGAAGCAAGTGTTTCTCATGTCGCTCAGCTGCCGAGAGGGACAAATGGATGGAGAACCTCAGACGAGCCGTTCACCCAAACAAGGACAACAGCCGTCGGGTAGAGAACACCCTTCGGCTGTGGGTGATCGAAGCCAAAGATCTTCCGGCCAAGAAGAAGTACTTCTGTGAGCTGTGCCTGGATGATGCCCTTTATGCCCGCACCTCCTGCAAGCTGAAAGCAGACAACGTCTTCTGGGGAGAGCACTTTGAGTTCACCAACCTGCCTGCTGTCCAAAACATCACTGTCCACCTCTACAGGGactcagacaaaaaaaagaaaaaagacaagaacAACTATGTGGGACTGGTAAACATCTCGGTAGAAAGTGTGACCAGTAGGCAACTTGTTGAGAAGTGGTACCCTGTTAGCACACCAAACCCAGGGAAGGGAAAGACTGCAGGACCTATGATCCGGATAAAGGCCCGCTACCAAAGTATGAATATCCTTCCAATGGAGATGTATAAGGAATTCGCTGAATACACTACCAACAACTATATGCTGCTCTGCTCTGTGCTGGAACCAGCCATCAGTGTCAAGAACAAAGAAGAGATGGCTTGCGCCCTGGTACACATCCTGCAAAGCACTGGGAAAgccaagGACTTCCTGACTGATCTGATGATGTCTGAGGTGGACAGATGTGGCGAGAACGAGCACTTGATCTTTCGCGAGAACACACTGGGTACCAAAGCCATCGAGGAGTACCTCAAACTTGTGGGCCAGAAATATCTTCAGGATGCACTGGGGGAGTTTATAAAAGCACTGTATGAGTCAGATGAAAATTGTGAAGTGGACCCGCCGAAATGTTCAGCCAGTGACCTTCCTGAACACCAGAGCAACCTGAAGATGTGCTGCGAGCTCGCCTTCTGCAAAATCATCAACTCCTACTGtgtttttccaCGAGAACTGAAAGAAGTGTTTGCATCGTGGAGGCAGGAATGCAGTAACCGTGGGCGTCCGGACATCAGCGAGCGTCTGATCAGTGCCTCATTGTTCTTGCGCTTCCTGTGTCCTGCCATCATGTCTCCATCCCTGTTTAACCTGACACAGGAATATCCAGACGAACGCACGGCtcgcacactcacactcatcgCTAAGGTCACGCAGAACCTCGCCAACTTCACCAAGTTCGGCAATAAGGAGGAGTACATGTCCTTCATGAACCAGTTTTTGGAGCACGAGTGGACCAACATGCAACGCTTTCTACTTGAGATCTCCAACCCCGAGACTATCTCCAACACGGCCGGCTTTGAAGGCTACATCGACCTTGGCCGTGAGCTCTCCACGCTGCACTCCTTACTAGCCGAGGTCGTGTCTCAAATGGATCAGGCTGCCACCTCCAAACTGGGTCCATTACCCAGAATCCTCCGAGATGTTCACACAGCACTGACTAATCCATCGAGTGTTCAGGTGCCTGCGCCATCTGATAGCGCTCCGTCCCCTCCGCCTGCTGGGTGCAGTGTCTCTACTAGCCTGCAGAAAATGACCATGGACAGTGACCTATCAGGCCTGGTTGACTTCACCCGTCTCCCCTCGCCAACTCCAGAGAACAAGGACCTGTTTTTCGTGACACGTTCTTCAGGTCTCCATGGCTCACCAGCCCGCAGCTCCAGCTACTCCGAGGCCAATGAGCCTGAACTTGGCCTGTCCAATGGCGCTAAAAGTCTGTCCATGGTGGACCTACAGGAGGCCACCAGGACCTTGGAACTCATCCCAGTCACAACAGAAGGTACTGTTGAGAAGCACCTGGTGGCTTGGAACACCCGGACGCCACAGTGCAACCCATCCGGAGGCCCCACGCTCCAGAAGGTGGGGCAGAAGTCCACAAGTACAGCAGGAGAGGTGATGCCAGGCAGGCCAGTTCAGCTCCTCGCCCCTCTGTCCTTTCAGAATCCCGTGTACCAGATGGCGGCAGGATTGCCTTTGTCTCCAAGAGTGCCGACTGGAGGAGATTCTGGCTCTGAATGTCACAGTTCTCTCAGCTCGCACAGCAACAATGAGGAAGCCGGGTGCGGGAAACTCAGCTTCCTGAACCAGGGGGGTGGGGTCGGGGACGAGTTGGCCAGAAGCTCTGGGGAGTTTTCAAGAAGGCAGCTCTCGCTTACTGAAGCACTGCATGGAGGATGCCAATCTGCAGTGCCACGTCAAAACAGCTCCGGTCCGCAGCGCCGAATCGACCAACCACCACCACCCACACAGGCTGCTGCCCCCCGTGGACGGACTCCGCCCAGCATGCTGAGCTCTGCCCCGTACCCACGGCCCTCAAGTGGCAGCGCTGTTTCGTCATCACCTGATTGGCCGGGGAGTGGTGCGAGACTTCGTCAGCAGAGCTCATCTTCCAAAGGGGACAGTCCTGAGACGAAGCAACGGTCACAGCACAAGgCCCCGTCCCCAGTGATCCCCAGTGCGTTGGATCGTACGGCTGCGTGGTTGATGAATGTGCCGTACTTAGAGCAGGACTCAGAGACAGATCCACGCAGGGATGCTCAAGCACTCAATGAGAAGtaTCAGGCAGAGATAGCCGTGCTGCAGGATCAGCTAcgcgtgtgtgtgcagcagcTGGAGCAGTGTGAGGCTCGGCTGCACTCTCAGGACGATCAGGCTCAACAGCTGCTGCTGCAGTACCAGAACCGTCTGGAGGACGCTGAGCAGAGACTGCACCGCCAGCAGGAGGACAAAGAGCTGCAGATGAAGAGCATCATTAGTAGGTTGATGTCTGTTGAAGATGAGCTAAAGAAGGATCATGCTGACATGCAGTCCGTAGTCGACGCCAAGCAGAAAATTATAGACGCACAGGAAAAGCGGATAGCTTCTCTGGACGCGGCGAATGCGAGGCTCATGGGGGCTCTGTCTCAGCTGAAGGAGCGCTACAGCATGCAGACCCGCAACGGCATCTCACCCACCAACCCCACCAAGCTGCAGATCACTGAGAACGGAGAGTTTCGCAACTCCTCCAACTGTTGA

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457310 lncRNA downstream 196826 12826786 ~ 12827523 (-) True G385758
TU457305 lncRNA downstream 215303 12807258 ~ 12809046 (-) False garnl3
TU457304 lncRNA downstream 215303 12807330 ~ 12809046 (-) False garnl3
TU457233 lncRNA downstream 305760 12717209 ~ 12718589 (-) True G385692
TU457133 lncRNA downstream 476220 12547806 ~ 12548129 (-) True G385595
TU458280 lncRNA upstream 37266 13193989 ~ 13194202 (-) True G386630
TU458282 lncRNA upstream 38065 13194788 ~ 13194993 (-) True G386632
TU458294 lncRNA upstream 50676 13207399 ~ 13208074 (-) True G386644
TU458377 lncRNA upstream 136800 13293523 ~ 13322992 (-) True G386705
TU458402 lncRNA upstream 170602 13327325 ~ 13349203 (-) True G386730
XM_034300918.1 mRNA downstream 34259 12934134 ~ 12990090 (-) False si:dkey-34e4.1
XM_026922512.2 mRNA downstream 34260 12934134 ~ 12990089 (-) True si:dkey-34e4.1
XM_026921556.2 mRNA downstream 133315 12807201 ~ 12891034 (-) False garnl3
XM_034300957.1 mRNA upstream 5749 13162472 ~ 13179627 (-) True si:dkeyp-72a4.1
XM_026922485.2 mRNA upstream 130129 13286852 ~ 13320343 (-) False zswim7
XM_026922481.2 mRNA upstream 130129 13286852 ~ 13320343 (-) False zswim7
XM_034300619.1 mRNA upstream 130129 13286852 ~ 13320343 (-) True zswim7
XM_026922483.2 mRNA upstream 130129 13286852 ~ 13320097 (-) False zswim7
XR_003403212.2 other downstream 1325805 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 1396767 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 1396827 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 1940408 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 2418077 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 656510 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 758641 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1759939 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 3220862 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 3274669 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile