RNA id: TU457310


Basic Information

Item Value
RNA id TU457310
length 531
lncRNA type intronic
GC content 0.33
exon number 2
gene id G385758
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12826786 ~ 12827523 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TagcacaacaaatgaatttaaattctaAGAAGCGTGCCTGAAGGGTTCCGCGTGATCATGCGTGACAAATCGCATGAAACCACGTGAAAAAACGTGCATTCTTAAAGGCCAGATCTGTATATGtgcctttctaaatcatgtccaatcaactgCATTTGCCACAGGTGTACTCCAGCCAAGACATTGCAAAATAATCGAAGCCTTAGCCAAGggttaatttttcatttttaataaatttgaagaataattttttaaaaacatgttctcACTTTGTCATCATGGATTATTTGGTGTCGATTAATGGCAAAGTAAATTTAAtccatttcacaataaataatggaagaggtctgaatactttctgaacccACTGTATATAACACCACATACCCATGGAGCTAGTCAAATTTGATTGAAACCTTATTGAAGACTTGTATTATGATTGTTACTAtatattttaggtttttttaggtttctattttttcttgtatttttgtgtttgtcttctgtttttatAAATTGGCTGCATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457305 lncRNA downstream 17740 12807258 ~ 12809046 (-) False garnl3
TU457304 lncRNA downstream 17740 12807330 ~ 12809046 (-) False garnl3
TU457233 lncRNA downstream 108197 12717209 ~ 12718589 (-) True G385692
TU457133 lncRNA downstream 278657 12547806 ~ 12548129 (-) True G385595
TU457128 lncRNA downstream 356612 12469940 ~ 12470174 (-) True G385590
TU458280 lncRNA upstream 366466 13193989 ~ 13194202 (-) True G386630
TU458282 lncRNA upstream 367265 13194788 ~ 13194993 (-) True G386632
TU458294 lncRNA upstream 379876 13207399 ~ 13208074 (-) True G386644
TU458377 lncRNA upstream 466000 13293523 ~ 13322992 (-) True G386705
TU458402 lncRNA upstream 499802 13327325 ~ 13349203 (-) True G386730
XM_026922053.2 mRNA downstream 360804 12344518 ~ 12465982 (-) True lamc3
XM_026922261.2 mRNA downstream 485190 12320637 ~ 12341596 (-) True aif1l
XM_034300577.1 mRNA downstream 517166 12285856 ~ 12309620 (-) True gfm2
XM_026922020.2 mRNA downstream 579221 12236141 ~ 12247565 (-) True enc1
XM_026922128.2 mRNA downstream 606752 12219094 ~ 12220034 (-) True LOC113531392
XM_034300918.1 mRNA upstream 106611 12934134 ~ 12990090 (-) False si:dkey-34e4.1
XM_026922512.2 mRNA upstream 106611 12934134 ~ 12990089 (-) True si:dkey-34e4.1
XM_026922046.2 mRNA upstream 196094 13023617 ~ 13114198 (-) True dab2ipb
XM_026922047.2 mRNA upstream 196826 13024349 ~ 13156723 (-) False dab2ipb
XM_026922048.2 mRNA upstream 196826 13024349 ~ 13145736 (-) False dab2ipb
XR_003403212.2 other downstream 1128242 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 1199204 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 1199264 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 1742845 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 2220514 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 985710 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 1087841 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 2089139 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 3550062 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 3603869 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1763160 True 259 lncRNA 0.44 1 NC_048582.1 33508353 ~ 33508611 (-)