RNA id: XM_026922261.2


Basic Information

Item Value
RNA id XM_026922261.2
length 2620
RNA type mRNA
GC content 0.39
exon number 6
gene id aif1l
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12320637 ~ 12341596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAAAACAAAGGACGGTTCACTGGCGGACGCCCCTCACTGAACTCCAGCGCCTTGCGCTTATTCTCCTCCGCCTCCTCACAAGAGAACAGGAGTTCCATCGCTTCTGACCTGCTCTATCATGCCGTCTAATCAGAATGTACAAGGTGGGAAGGCGTTTGGATTATTGAAAGCGCAGCAGAGGGAGAAGCTAGAAGAAGTGAACAGGGAATTCTTGGAGGATCAGAAGTACAGCGATGAGGAGGATTTGGCAGAGAAGCTGGATTCCTTCAAAAACAAATATGCAGAATTTGACCTGAACGATGAGGGAGAGAtcgATATGATGGGTCTGAAGAGGATGATGGAGAAGCTTGGTGTGCCCAAGACACATTTggagatgaagaagatgatCTCAGAGGTGACTGGCGGCAGCAGCGACACCATCAACTACAGAGACTTTGTTAAGATGATGCTGGGGAAGCGCTCTGCTGTGCTGAAATTGGTGATGATGTTCGAGGACAAGGCTAACAGCCCTGACTGCAAACCAGATGGTCCGCCACCAAAACGTGACATCGCCAGCCTACCCTAGAGTGTCCTGGAAGCAGAGGCCACCAGTTCCCACCCATTTCAAATCCAGTGGGCTAAGTGTACATAGCCTTATCCAACATCATTTCTAAGAACCTAAGGGAAAATCTGAGGTTTAGAGAAAGATGGAGGGGATAAATgcccaaaaagaaaaaaaaaaaaagagatagcTATATAAATTTGCTGTGAAGAGGTCAAACCGCAGATTAGCTTTTTTTATAAGTCaagaaatgtatatatttatatggaaATAGGTCTTTTTGAAGTGTACTTATTCCTTTTAATGGAGTCGTttgatgaaaatgaacaaagtgTGTTTGttaacagtgcagtgtgtaacatTTGAACGTGTATTAAGTGTACTGTGTGGGATAAGACCATTTTATTTCCGaaaattttacaatattttaatttagaactGAGATTAAGGTGTTTGTCTTCCCAGCCACACATTTATTTTGAGTGCTTTTTCATTAGCCAGATAAGTCTAATTCAATTAAATGAAAGCATTTGGTCTTAAATTCTCACTAACCTGTAGCTGCAATGTCCAGTCACGTAAGTTGTAAGGTAATGCCAATAATACCTATATGCCATTTTATAGTAGGACAGTTAGAGGcatttacactcactggccactttaataggataATGTTTTTCAGTGTTGGTAAatgacaggctggtttgagatAAGAAAGCACACGGGATCAAGCCGACAGGAAGGCCACGGTAACGcaaacaaccactctttacaaccgtagtgagcagaaaagcatctcagaatgcataacacaCCAAACGccgaggcggatgggctacagcagcaggtAGGAATCTGAGGGTACAAtcggcacaggctcactgaaactggaagGGGATATTTTTCCAATCCTAAATCATCCAatttctgtgagcctgtgcccattaTAGCTTCAGATTgctgtgaaattcccaggagatcagcagtttctgaaataatcaaaccagcgcatctggcactaacaaccatgccatggtccaagtggacagtgagtgtatatatatccATTCTTGGTACTTTAATATtatagggatttttttttttttttggtctgaatTTCCATCACAGAAGGGGGCCAAGAAAGCAAAGGAGGAGGATTCACAGGCTTTTGCTAGTTTCTGCTAGTAGCAGGTTTCATTCCTTCTAGCTTATATACCTCATAGCCTTCCATTCATGTTCAtcctctttttaattttttttgttctttttttcccgGGCTGTGTGACTTGTCTGAGTTAAGATGTGATTAGTATTTTTAGTGAAACACTGTTAGCTAAGCACAAAACAATGTATAGTTTGTTACAAACATCTAGGGTCCATTTTATATTCATCAAGATCGATGCATCACACTTGGAAAAATGCCATAATTCTACACTCATTGAAACAGGGTCACTTTCTGCTTACTGTAAATCAAGTTGAAATCAGGCTTTCCAAGTGCCTCACACAGTTCTGATGTAGCCAGTTTACACTCAGCATGTACAAAATGGTTTTGTGTATAAATCATTTCGAGTCTTTAAATTTATTCCTCACTCCCACATGCATCTCCTCTCAACTCACTGACTGTGATGTTCTcgaaaacatttccatttgtgctatttatttcataattctTTACAGCACGTATCAGTAATTCCTAGCTCGGTAGCTAATCGTAATAAAAGAGGCTGAATTTCCGAATGAACCGTTTTCTTTCCACACTTATCATATGTATCTCTTGGCCTATAGGCTCATGTGTTTCcaatcattttataattttatccaGTTTATGTAGAAATTGTGCGTCtctttgaatttttattttttttcattcctgttTAAGTGCAAAATTTGAAAATATGAATTAGCAGttgcactgtatttttatttagagtttTTAGATTACTATTATTAGTATGTTCTTTCAGCATAATAGTGAATGCAGGCATTTTCTTATACGGTAGTTCACatggggttttttgtttgtttattttatttttttgcaaacacCAAAGGAAATAAAGATCATATTGTGACACCGGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K18617 AIF1; allograft inflammatory factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456798 lncRNA downstream 310414 11984134 ~ 12010223 (-) False G385292
TU456797 lncRNA downstream 310414 11988634 ~ 12010223 (-) False G385292
TU456796 lncRNA downstream 310414 12002369 ~ 12010223 (-) True G385292
TU456770 lncRNA downstream 422247 11895557 ~ 11898390 (-) True G385272
TU456722 lncRNA downstream 485629 11833838 ~ 11835008 (-) True G385229
TU457111 lncRNA upstream 826 12342422 ~ 12342631 (-) True G385574
TU457127 lncRNA upstream 127633 12469229 ~ 12469882 (-) True G385589
TU457128 lncRNA upstream 128344 12469940 ~ 12470174 (-) True G385590
TU457133 lncRNA upstream 206210 12547806 ~ 12548129 (-) True G385595
TU457233 lncRNA upstream 375613 12717209 ~ 12718589 (-) True G385692
XM_034300577.1 mRNA downstream 11017 12285856 ~ 12309620 (-) True gfm2
XM_026922020.2 mRNA downstream 73072 12236141 ~ 12247565 (-) True enc1
XM_026922128.2 mRNA downstream 100603 12219094 ~ 12220034 (-) True LOC113531392
XM_026921516.2 mRNA downstream 300686 12011209 ~ 12019951 (-) False ankra2
XM_026922053.2 mRNA upstream 2922 12344518 ~ 12465982 (-) True lamc3
XM_034300428.1 mRNA upstream 465605 12807201 ~ 12891295 (-) False garnl3
XM_026921550.2 mRNA upstream 465605 12807201 ~ 12891275 (-) False garnl3
XM_026921556.2 mRNA upstream 465605 12807201 ~ 12891034 (-) False garnl3
XM_026921552.2 mRNA upstream 465605 12807201 ~ 12891034 (-) False garnl3
XR_003403212.2 other downstream 622093 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 693055 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 693115 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 1236696 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 1714365 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 1471637 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 1573768 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 2575066 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 4035989 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 4089796 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile