RNA id: TU457127


Basic Information

Item Value
RNA id TU457127
length 654
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G385589
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12469229 ~ 12469882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaggtgctcgtggcaactgcagccccaaagccactacagcaatcgcagtcccaagccattacagtacagctccccatatgtgatctccaagccatctccacagcccccaggtggcaccatccccagcaatccaaacagttcttcaggctgtccatatggggccacccccagcagcagcgagcgaactcaaccgatgagaactccaaccagaagtagggcatcgggatgggtcaggcagcgaggagcagaaggggtcaggatcactggcatctcagaagtagcatgtgtagctcgacagagagtgagggagagagagatggagagagatggagagattgttaggtaagcttttgtcctctaatggctaaggacaatgtactttgagtgcagagtgcaagcagggactccggcaagactagctatgacagcataactgatactgtatacatcaccaCAAATGTCAGGCCTATAGAAATGGGCCATTAAAAAGGTGCAGTGTTTTATCTACTCCTAGGTGCCTGGCCGTGGGACTACAATAAGCTGTGCTGAAAAGCATTTCAACATTTGGGGTTTTGGGACGAACAACTGGGTCACAGCAGAGGTGCTCTGCTTGCAGCTCATCCTGGCCTAGTCTCAGTGAGGTGATGTACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457111 lncRNA downstream 126598 12342422 ~ 12342631 (-) True G385574
TU456798 lncRNA downstream 459006 11984134 ~ 12010223 (-) False G385292
TU456797 lncRNA downstream 459006 11988634 ~ 12010223 (-) False G385292
TU456796 lncRNA downstream 459006 12002369 ~ 12010223 (-) True G385292
TU456770 lncRNA downstream 570839 11895557 ~ 11898390 (-) True G385272
TU457128 lncRNA upstream 58 12469940 ~ 12470174 (-) True G385590
TU457133 lncRNA upstream 77924 12547806 ~ 12548129 (-) True G385595
TU457233 lncRNA upstream 247327 12717209 ~ 12718589 (-) True G385692
TU457305 lncRNA upstream 337376 12807258 ~ 12809046 (-) False garnl3
TU457304 lncRNA upstream 337448 12807330 ~ 12809046 (-) False garnl3
XM_026922053.2 mRNA downstream 3247 12344518 ~ 12465982 (-) True lamc3
XM_026922261.2 mRNA downstream 127633 12320637 ~ 12341596 (-) True aif1l
XM_034300577.1 mRNA downstream 159609 12285856 ~ 12309620 (-) True gfm2
XM_026922020.2 mRNA downstream 221664 12236141 ~ 12247565 (-) True enc1
XM_026922128.2 mRNA downstream 249195 12219094 ~ 12220034 (-) True LOC113531392
XM_034300428.1 mRNA upstream 337319 12807201 ~ 12891295 (-) False garnl3
XM_026921550.2 mRNA upstream 337319 12807201 ~ 12891275 (-) False garnl3
XM_026921556.2 mRNA upstream 337319 12807201 ~ 12891034 (-) False garnl3
XM_026921552.2 mRNA upstream 337319 12807201 ~ 12891034 (-) False garnl3
XM_026921554.2 mRNA upstream 337319 12807201 ~ 12891034 (-) False garnl3
XR_003403212.2 other downstream 770685 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 841647 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 841707 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 1385288 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 1862957 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 1343351 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 1445482 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 2446780 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 3907703 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 3961510 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile