RNA id: XM_034300561.1


Basic Information

Item Value
RNA id XM_034300561.1
length 1742
RNA type mRNA
GC content 0.52
exon number 8
gene id abr
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13325782 ~ 13477225 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATCAGATCGTGAGCGCAGCTGAGAGGAGCAGAGGGATGCAGGCAGCTCGAGCAGGACGTTTCCTCCGGAATGAATCTTGATcacttttctcattttcatcaCTCCATCCCAATCAAAGGGTGGAAATTTAGACATTTTGTGGTTTgcttatagttttttttttccattctaaagctgacctttttttttttggaattggGAAGATTTTTGGAACTGTTGGATACTCTACTGTTGGGAAGCTTCTTTTCCCCAGCCGTTAGGGGGTGAGTCACCCCCGGTTTTGCGCGTATTGTGTGTATTTGCGAGGTCAGGATGACTGAGATCGTGGTCACAGACTGTAACCTGAACTCGGTGTGCGAGCGCTTGGAGGAACGGTGTTGCGTGGATGAAGCTCCCGCTACGAAGAGCCACTCCAACACGGGCGCTAAGCTGTGGGGCCGCGTCCGCAGTAAACTCCTCCGCCAAAAGttggACCCACAGACTGTGCAGTCCAAGAACTGGCATGTGGACGTGATTGAGATGAACGGGATTAAAGTCGAGTTCTCGATGAAGTTCACGAGTCGGGACTTGAGTTTGAAGAGGACACCTTCGAAGAAGCAGAGCGGTGTGTTTGGAGTCAAAATCAGCGTTGTGACAAAaCGCGAGCGCTCCAAGGTGCCTTACATCGTGCGTCAGTGTATCGAAGAGGTGGAGAAGAGAGGGATCGACGAGGTTGGAATCTACCGCATCTCCGGCGTGGCCACCGATATTCAGGCGCTTAAAGCAGCCTTCGATACCAacACCAAAGACATCCTGGTGATGTTGAGTGACATGGACATCAACGCCATCGCCGGCACGCTGAAGCTCTACTTCAGAGAGCTGCCCGAGCCACTGCTCACTGACCGCCTCTACCCAGCCTTCATGGAAGGCATCGCTCTGTCTGATCCTGCAGCCAAGGAGAACTGCATGATGCACCTGCTGCGCTCTCTGCCCGACCCCAACCTCATCACCTTTCTCACCTTACTGGAGCACCTaaagaggGTGGCTGAGAAGGAGCCGGTGAATAAGATGTCACTGCACAACCTGGCCACCGTGTTCGGCCCTACGCTGCTGAGACCGTCCGAATCCGAAAGCAGCAAACCCCACATCACACTGGCCTCCGATATCTGGTCCCACGATGTCATGgcacagGTCCAGGTGTTGCTTTACTACCTACAGCATCCTCCCATCTCCTTCGCCGAGCTGAAGAGGAACACGCTCTATTTCTCCACGGACGTTTAACCCCCAACACAGAGACACTTCCATCCATTCCCTCCAAACACCATCATCGATTTCCTGTACAGAATTCCACCCGCGCAGGAGACACCGGACAGAGACGACTGCCTCCTTCCTGTCCTCGTCTCGTGCCGTTCTGAGCGTGTGTGCGGTGAGAGCAGCGGCCACACCCCCTCTGCCCGGACAGAGAgctggagatggaggaggattGACGGCTTTGAACTTCCACCTGTCAAACAggacgtgtgtgtttgtgcctgaAAGCGAGAGGCATCATGGGAAGTTTGCCACCCCAGTTCAGTGACGCCGGTGCAAGAGATGTGTTCGAACTCTctgctaaattttttttttctgttggtgTTTATTCTGAGGCATTACAGAAATCATTCATGCATACCACCACATCTGCATTTCCTACATATATTATTAGTTTACCAGCTCTTCTGGTTTCGTTTTTGGCTTTTGCACATGTCTgaacaaaactgt

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458377 lncRNA downstream 2790 13293523 ~ 13322992 (-) True G386705
TU458294 lncRNA downstream 117708 13207399 ~ 13208074 (-) True G386644
TU458282 lncRNA downstream 130789 13194788 ~ 13194993 (-) True G386632
TU458280 lncRNA downstream 131580 13193989 ~ 13194202 (-) True G386630
TU457310 lncRNA downstream 498259 12826786 ~ 12827523 (-) True G385758
TU458441 lncRNA upstream 178802 13523086 ~ 13523322 (-) True G386763
TU458487 lncRNA upstream 271838 13616122 ~ 13680509 (-) False selenow1
TU458494 lncRNA upstream 326939 13671223 ~ 13672140 (-) True G386814
TU458486 lncRNA upstream 331699 13675983 ~ 13680509 (-) True selenow1
TU458536 lncRNA upstream 465317 13809601 ~ 13827854 (-) True G386845
XM_026922235.2 mRNA downstream 3321 13321245 ~ 13322461 (-) True nanos2
XM_026922481.2 mRNA downstream 5439 13286852 ~ 13320343 (-) False zswim7
XM_026921501.2 mRNA upstream 140298 13484582 ~ 13503992 (-) True aspa
XM_026921500.2 mRNA upstream 162228 13506512 ~ 13516580 (-) True pho
XM_026921466.2 mRNA upstream 187029 13531313 ~ 13652955 (-) True LOC113531016
XM_034300711.1 mRNA upstream 231152 13575436 ~ 13652955 (-) False LOC113531016
XM_026921467.2 mRNA upstream 248058 13592342 ~ 13652955 (-) False LOC113531016
XR_003403212.2 other downstream 1627238 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 1698200 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 1698260 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2241841 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 2719510 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 468949 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 571080 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1572378 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 3033301 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 3087108 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile