hnrnpul1l (LOC108259896,LOC107595510,LOC105027039)


Basic Information

Item Value
gene id hnrnpul1l
gene name LOC108259896,LOC107595510,LOC105027039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13731209 ~ 13744359 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300473.1
GAAGTTTAGCCAATCAGAGGTTGGATTGAGAGCTACGCGCGCTTGCTGGGGATAGTCCCGGAAGTAGTGAAGTTCTGTAGGCTTCGGTCACCCTCCATCTTGTGGATACCGCagctactgaaaaaaaacacacataaaagGGTGACAGGTTTGCGTTTTGCCGGACTCGTGAGTGAGTGAGCGGAACTATGAGCACGCTGAACGTGAAAAAGCTCAAAGTGAACGAGCTGAAAGAGGAGCTGCAGCGTCGTGGCCTGGACACTCGGGGTCTGAAGGCGGATTTAGCGGACAGGCTGCAGGCGGCGCTGGACGCCGAGGCCGCCGccggagcagcagcagcagaagaagaaggagaagaagagcaGGAGGCGGAAGAGGCGGAGGCAGAGGAGTGCGGGGGCGGAGATTTTGCTGCTGATGTGTCGGGCAACGGAGAAGCCGACGTGTCTCAGTATGATGACGGAAACAACGGCTGTCAGAACCAGGAAGAGGAGGCAAACAGCGAGGAAGATGACAGTAACGAGAACAGCGATGCTGGTTTTGGATCGACCGACTTCGCCTCAGATGATCTGGACCCACCAAAGCAAGGCTTCGGGCAGCAGATACAGCAAGGCTACGACGAGGATCAAGAAGCCGATTGGAGCTATGAAGAGCCAGCTAAGAGCCAGGGCTCGCAGGATCCTGAGGTGAAGCAGGAGTACGAGGAGCCGGATGCACAGCAAGAGCAGTTTGAGGAAGCACAGGAGCAGCCAGAAGTCAAAGAGCCAGAAACAGAACAGTCTCAGCAGCAGGTGACCGCTGTGAAAGCGGAGTTAAAGAAGGACGATGACGCGCCGCCGCAGGAAGAGGCAGCAAATGATTGGACGGCCGGCGAAGGTGACGGAGTAGCGCAGGTTAAAACGGAAGACGACCAACAGACATCACAGAGCCGCAAAAGACCCTACGACGACGGCCGTGGATACGGATACTACGAGCATCGTGAAGACAGGAGGGGCCGGTCGCCTCAGCCTCCAGccgaggaagaagaggaagactTTGATGAAAACCTTGTGGCTATTGACACCTataaCTGTGACCTGCATTTCAAGGTGTCTCGAGACCGGTACAGTGGCTACCCGCTTACCATCGAGGGGTTTGCATATTTGTGGGCAGGTGCCCGAGCTACTTACGGTGTTTCTAAAGGACGTATATGCTATGAAATGAAGATCAATGAggagatttctgtaaagcaccTCCCCAGCAGTGAGCCTGATCCCCATGTGGTGAGAATCGGGTGGTCTTTGGACTCCTGTAGCACTCAGCTTGGAGAGGAACCCTTCTCCTATGGCTATGGTGGAACTGGCAAGAAATCCTCGAACTGTAAATTCGAGGACTATGGAGAGAGGTTTGGTGAAAATGATGTCATTGGCTGCTACCTtGACTTTGAAAGCGGAGAGCAAGTGGAGATGGCGTTCTCCAAAAACGGCAAGTGGCTTGGGCCTTGCTACCGCATCTCTCGTGAGGAGCTGGCCGGTCGTCCTCTCTTCCCACACATCCTGGTGAAGAACTGCGCTATAGAGTTCAACTTCGGACAGAAGGAGGAGCCATATTTCCCTCCGCCTGAGGGCTACACGTTTATTCAGGAGCTGGCGTTGCAAGACAGAAGCAGAGGATCAGTTGGGCCAGCTACCAAAGCAGAGTGCGAGATTCTAATGATGGTAGGACTACCTGGCAGTGGAAAGACCACATGGTCCATTAAGCACTCCAAGGAGAACCCTGAGAAGAAGTTTAATATTCTGGGTACCAATGCCATAATGGACAAGATGAAGATGATGGGACTCCGTCGCCAGAGGAACTACTCCGGGCGCTGGGACGTTCTCATCTCACAGGCCACGCAGTGCCTCAATCGCCTCATCCAGATCGCAGCTCGCAAGAAACGCAACTACATCCTGGACCAGACAAATGTATATGGATCAGCCCAGAGACGAAAAATGCGTCCTTTTGAAGGGTTTCAACGCAAGGCTATTGTAATTTGTCCCACGGATGAGGATTTAAAAGAGCGAACATTAAAGCGAACTGATGAGGAAGGGAAGGATGTACCCGATCATGCTGTTTTAGAAATGAAAGCCAACTTCGTGCTGCCTGATGCCGGCGAGTTCCTGGACGAGGTGATATTCACGGAGCTGCAGCGTGAAGAGGCCGACGCGCTCATCAAGCAGTACAACGAGGAGGGCCGAAAGGCTGGCCCGCCACCCGACAAGCGCTTCGATAATCGGCCCGGAGGCTTCCGCGGCCGTGGCTTCCAGCGCTACGAGCACCAAGGCGCTCCACAGGGAGCACGAGGCTCGTACCAGAACCGTGGCAGCTCTGGAGGAGGTGGCTACCGTGGAGCCTACAACCGTGGAGGGTTCAGCCAGAACCGCTGGGGGAGCAACTATAGAGATACAGGAGGCCGGGGAGGCTACAACCGCAACCAACAATCAGGAGGCAGCTACAACCACAGCCGCCAGGGCTCCTACAACAAAGGAGGCAGTGGAACCGGTGGTAGCTACAGTCAGTCCCAGCCTCAGAACTACAATCAAGGTTACAACCAAAGTTACAACCAAGGCAGCTACAGCCAGGGGTACAACTATGGAAACTACAGCCAGTACCCAAGTTACAACCAGGGCTATAACCAGACGCCTGCAGCCACGGGCCAGTCGTAcagtcagcagcagcagcagcagcagcagcagcagcagaactACAACCAGCAGTACCAGCAGTACGCTCAGCAGTGGCAGCAGTATTACCAGAACCAGAGCCAATGGAACCAGTACTACAACCAGTACGGAAATTACGGCAACTACCAGCAGGGCCAGGGCTCGCAGCAGTAGCCGTGTCCCCCCCTGTGGCTCTTCCATATCATTCCATCAGCTCTAttcttcagttttgttttttttttttttaaattagtctcTTTCACTTTCAGCCAGTCTTCCTTTTCTCTCAGACCATTCCCCCTGTGCTAAACGTTTGCTTTTACTCTCTTAACAGCCTCAGTTTTACAATTAACTGGATTTATTTTGCGCCCCCCATCATTATTACTGCGTTTTATTTTTGGATTGAGTAGTCCGCTTTGCTTCGGAAGcatttccaaacacacactgacgcGTGTGATAAGTAGCGATGTGTAAAGTAGTTTGGTTCAGATTCTTGCTCGCGGGGATgcatatacatttaaataatttcgATTTGAGTTTTGTATGTTGaacatttgcattattttatttgtcttctaatcatatgttttggaaaaaaaattagatttcaAGTAGCCCTGTTAAATTGTTTATGGGATTCAGAACACAAGTGTATCTAATACAAGTGAAAATTTAAAGACCCTAATTTTTCATAActtataataaatcataatcaaTGATGGATAACGTTTTATACCATTCTTACATGTCTTAATAGTTTCAGTTTTCTCCTTGTATCTACAATTTAGTGAGCACTATGTGGTTCTAAGTTTTTATACCTTGTACCATGTTTGTAAAACTGTATTggcatgttgttgttttttgtctgaTCAAAgctcatttttttgtatttgagaATATAATATGAAACGAAAGca

Function

NR:

description
heterogeneous nuclear ribonucleoprotein U-like protein 1

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300473.1 True 3598 mRNA 0.50 16 13731209 13744359

Neighbor

gene id symbol gene type direction distance location
sympk sympk,LOC107681888,LOC107685698 coding downstream 1737 13719345 ~ 13729472 (-)
rsph4a rsph6a coding downstream 13107 13713676 ~ 13718102 (-)
si:dkeyp-117b8.4 LOC108259900,LOC108428299,LOC103043164 coding downstream 23809 13703501 ~ 13707400 (-)
ehd2a LOC108260244,LOC108427007,LOC107712157 coding downstream 35706 13683350 ~ 13695503 (-)
akap10 akap10 coding downstream 57591 13655790 ~ 13673618 (-)
LOC113531537 rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding upstream 21817 13766176 ~ 13776038 (-)
ap2b1 ap2b1,LOC107681897,LOC101171688 coding upstream 34177 13778536 ~ 13813583 (-)
orai2 LOC108259892,LOC108428392,LOC103026696,LOC107685638,LOC107595471,LOC107710735 coding upstream 68745 13813104 ~ 13820831 (-)
LOC113531678 NA coding upstream 68874 13813233 ~ 13813329 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding upstream 79027 13823386 ~ 13841334 (-)
G386814 NA non-coding downstream 59069 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 207887 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 382006 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 408217 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 523135 13207399 ~ 13208074 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 65242 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 109478 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 131658 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 166903 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 171005 13915364 ~ 13915497 (-)
selenow1 LOC103044489 other downstream 50684 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 839914 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2032665 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2103523 11546309 ~ 11627686 (-)
G384960 NA other downstream 2647268 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1172303 14916662 ~ 14923390 (-)
nrgna NA other upstream 1274534 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2137979 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2619135 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 3013881 16758240 ~ 16763476 (-)

Expression


Co-expression Network