RNA id: XM_026922328.2


Basic Information

Item Value
RNA id XM_026922328.2
length 2010
RNA type mRNA
GC content 0.51
exon number 7
gene id rsph4a
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13713676 ~ 13718102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCTATGGCAACGAACTGGCGCTGTTTTTTGTAGACATGTAACGCGCAATAAAGAACATAAGGGTGCattaaatatagttttattatttattttcttttgtttttaactgaaCGACAGAAACATGGAGAGGTCTGTGGAAGCGCTGGCTGACCAGAAGCAGCGGTCTGCAGCCTGCTTCAAGGCTTTCCTGctgaaaaacagcacaaaaacaaacctCAACCTCTATGACCATCTGGTTCGCCTGCTCACCAGAGTGATGGACGAGCGTCCGGAGAACGCAGTGGATGTGATTGAAGATCTGAGCCACGAGATAAAGCGCGGCATGCTGCAGGAGAACCAGAGCACGCTGCGGGACGCGCCGTCCACAACCTCCTCTGAGCTGCTGGCTGAGCAGCAGAGAGCGCTGTTTAACCGCGGGGGCGAGGGAGAACAAGAGGAGATGGAGACACCCCTGCCCAATGTGACTGAGCTGACTTTCTTCCTGGAGCAGATTGGGGTTGGTCTGGGTCGGGAGGAGATGCAGAGGATCCTCCTGGCCCTGAAGCAGCTGGTGGACATGCAGCCCCTGCAACGCTGCCGATTCTGGGGCAAAATCCTCGGTATTGAAGGGAACTACGTGGTGGCTGAAGTGGAATACAGGGAcggtgaggaagaagaggaagaaggagtGGAGGAAAAGGATGAAGAcaaggagaaagagggagaggctCAAGAAGAAGATGAGCTGGATCCATTCCCCAAGTCAAGCTACAAGCCACCCACCCCAGTAACTAAGGAGCCTCGTCGCTCCGGTGCCAACAAGTTCAcctactttgtgtgcagagagcCTGGCCTGCCCTGGGTCCGTCTTCCTGATGTCACCCCAGCTCAGATCACAGTCGCTCGACAAATTCGCAAGTTCTTCACCGGGTGCCTGGACGCACCCATCGTGAGCTACCCACCCTTCCCAGGCAATGAGGCCAACTACCTGCGTGCCCAGATTGCCCGCATCTCAGCAGGCACCCAGGTCAGTCCACTGGGTTTCTATCAGTTCAAAGAGGAGGAgggggaagaggaagaggaaggagcGAGAGACAGCGTCGAGGAGAACTCTGACTTTGAGGGTATCCCTGTGCACGAGATGGCAGAGTCGCTGTCGGCGTGGGTCCACCACATACAGCACATTCTCAAGCAGGGTCGTTGTGTGTGGGTCAATCTGgctgaaaagaaagagaatcTCCTTGAAGAAGatgcagaggaagaggagaaggaggaagaacCCGACGAGCCTGAGCCTGAGGTTGGACCGCCGCTTCTCACGCCACTGTCTGAGGACGCAGagGTTAATCACACGCCTCCTTGGACTACCAGGATCTCCTCAAACCTAATCTCCCAGTATGCCATTGCTTTTGTGCGCTCCAACCTGTGGCCTGGAGCTTACGCGTACGTGTGCGGCAAGAAGTTTGAGAACATATACATCGGCTGGGGGCTGAAGTTCTTGGGCGAGGGCTTTACCCCAGCGCTGCCTCCTCCCCCACAGCCCGAGTACCCCAGTGGCCCTGAGATTACAGAGGCACTGGACCCCAGTctgcaggaggaggaggctCTGAAGGAAGCCCAAGAGGAGAAACAGGCTGCGCTGGAAGACAACGATGCATTGGACGccgaggaagaggaggaagaagaggaaaactGAATGACACAGACTGATACACAGTGGACTGAGGTCTTTTAACATATGCGACTATATTAAACTGTTATGGATAAACATTgatcattttctcatttctttgttATTATACAGCGCTGTtaaatgcttgattctgattggccagaaggttgATTCGatttctgtgtttatattaatgcgctaatttgaatacattttcattCCTACAGTATAAGCCAATTTTCAGGGATGTgtataaacaaatttattaaaaacaaaaagcatgcaattGTTGATATAAtgtgtaaagttttctgtgaggaactATGTATCTATTTagcatttagggaaggagtaaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458487 lncRNA downstream 33167 13616122 ~ 13680509 (-) False selenow1
TU458486 lncRNA downstream 33167 13675983 ~ 13680509 (-) True selenow1
TU458494 lncRNA downstream 41536 13671223 ~ 13672140 (-) True G386814
TU458441 lncRNA downstream 190354 13523086 ~ 13523322 (-) True G386763
TU458402 lncRNA downstream 364473 13327325 ~ 13349203 (-) True G386730
TU458536 lncRNA upstream 91499 13809601 ~ 13827854 (-) True G386845
TU458541 lncRNA upstream 135735 13853837 ~ 13854055 (-) True G386849
XR_004577399.1 lncRNA upstream 157915 13876017 ~ 13876806 (-) True LOC117596230
TU458563 lncRNA upstream 193160 13911262 ~ 13916801 (-) True G386868
TU458564 lncRNA upstream 193160 13911262 ~ 13916801 (-) False G386868
XM_026922152.2 mRNA downstream 6276 13703501 ~ 13707400 (-) True si:dkeyp-117b8.4
XM_026922154.2 mRNA downstream 18173 13683350 ~ 13695503 (-) False ehd2a
XM_026922153.2 mRNA downstream 18174 13683350 ~ 13695502 (-) True ehd2a
XM_026922155.2 mRNA downstream 18191 13683350 ~ 13695485 (-) False ehd2a
XM_034300596.1 mRNA downstream 18231 13683350 ~ 13695445 (-) False ehd2a
XM_026922471.2 mRNA upstream 1243 13719345 ~ 13729472 (-) True sympk
XM_034300473.1 mRNA upstream 13107 13731209 ~ 13744359 (-) True hnrnpul1l
XM_026922321.2 mRNA upstream 48074 13766176 ~ 13776038 (-) True LOC113531537
XM_026922440.2 mRNA upstream 60434 13778536 ~ 13813583 (-) False ap2b1
XM_034300880.1 mRNA upstream 60434 13778536 ~ 13812681 (-) False ap2b1
XR_003403212.2 other downstream 2015132 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 2086094 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 2086154 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2629735 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 3107404 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 95131 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 197262 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1198560 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 2659483 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 2713290 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile