LOC117596259


Basic Information

Item Value
gene id LOC117596259
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11101827 ~ 11102812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577440.1
gatagatggagagagcaCGAGAAGAGAAGCGTGAGCGAAGAGCTACGCAGAACtcttgatttatttgattttatcaGGAAATACACTTGCGAGGAACAAGCAGTGTAAGTTATTTTGTTGAGAAACAAAATttcttagtagtttttaaaagAACTTACTTTTATCCTGTTGATCCGTGTCGCATCGCGCTGGAATTCAGTGGAGTAGGCCATCATTTCGTCATCCGCTGAAAACCTGAAAGGGAATAAGAAATAGCATTTATACATAAGGGAATCGgccaGTTTTGTCATTCTAGAAATCTAGATTTCGGACCTCCCTATTCGTAGACTGTATTGATGTGAACGCTTCACATGTGCATCGTGTAAAAATGGCGAGCCACCCGTGAGACGACGAGAGACACTTAcccctttttgtttttccccgTGGACTTCTGCATTTTTTGCATCACCTCTAGCAAGGTTTCGCCGGACTTCTGGAGGTTTGAAGTATCCACTATATTTTTGAGTACTGGGCTATTCATTGTAAGGAAAGAAATATCATTCGTTATTATTTGGACTGACACTGGATTGTGCATTTCAAGAGTTGCTGATACTGGGCTGATACACATCCAATTTGTGTATAATTCTTTAGGGTGCCAATTTGTGTATGCGATTCCATTTAACCGCTGATGTTTGGGTCTATTGCTTTGCATTTGTTGGACttgaatatatgtatatttgggTTATGTATATAAATTGGACTCTAAGGTGCTAAAATTTAGTTAATATTGATATAAgatcaaatataaaa

Function

GO: NA

KEGG:

id description
ko00450 Selenocompound metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577440.1 True 789 lncRNA 0.38 2 11101827 11102812

Neighbor

gene id symbol gene type direction distance location
mcc mcc,LOC106565572 coding downstream 119913 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 318837 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 434705 10558236 ~ 10667122 (-)
ungb LOC108280186 coding downstream 590117 10507836 ~ 10511710 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding downstream 623103 10460316 ~ 10478724 (-)
LOC113523726 NA coding upstream 44319 11147131 ~ 11151024 (-)
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding upstream 252862 11355674 ~ 11452919 (-)
foxd1 foxd1 coding upstream 887265 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 908397 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 1116282 12219094 ~ 12220034 (-)
G384962 NA non-coding downstream 28662 11062540 ~ 11073165 (-)
LOC113531553 NA non-coding downstream 184564 10914139 ~ 10917263 (-)
G384928 NA non-coding downstream 275873 10821637 ~ 10825954 (-)
G384927 LOC107667909,LOC107674520,LOC105024386 non-coding downstream 282067 10785595 ~ 10819760 (-)
G384925 NA non-coding downstream 316517 10784992 ~ 10785310 (-)
G385060 NA non-coding upstream 116249 11219061 ~ 11219490 (-)
G385061 mapkap1,LOC107661227 non-coding upstream 117144 11219956 ~ 11276974 (-)
G385067 NA non-coding upstream 182517 11285329 ~ 11285555 (-)
G385091 NA non-coding upstream 258721 11361533 ~ 11363792 (-)
G385109 NA non-coding upstream 343049 11445861 ~ 11446527 (-)
G384960 NA other downstream 17886 11078712 ~ 11083941 (-)
G384811 NA other downstream 495555 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 1846382 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2017743 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 2031568 9020715 ~ 9070259 (-)
map1b map1b,LOC107597920 other upstream 443497 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 588422 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1704389 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2513310 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3813850 14916662 ~ 14923390 (-)

Expression


Co-expression Network