ppp6c (ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418)


Basic Information

Item Value
gene id ppp6c
gene name ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10460316 ~ 10478724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921938.2
AGATCAGCCTCTGAGTTGTGACGTAGTTGCACTTCCGTACGCTGTAGAATGAGTTGTTGTTCTTAAAATGGCGCCGTTGGACCTGGATAAGTATGTTGAAATTGCAAGACAGTGTAAATATCTTCCAGAGAACGACCTAAAGAGATTGTGTGATTATGTATGTGACCTACTACTAGAGGAATCAAATGTACAGCCAGTGTCCAGTCCAGTCACTGTTTGTGGTGACATCCATGGACAGTTTTATGACTTGTGTGAACTTTTCAGAACTGGAGGACAAGTACCAGACACAAACTACATTTTCATGGGTGACTTTGTGGACAGAGGGTATTACAGTTTAGAAACTTTCACATACTTGCTAGCACTTAAAGCGAAGTGGCCGGACCGCATCACACTGCTGCGTGGGAATCATGAGAGTAGGCAGATTACACAAGTGTATGGCTTTTATGATGAGTGCCAAACTAAGTATGGAAATGCCAATGCTTGGCGATACTGCACAAAAGTGTTTGATATGCTGACTGTTGCTGCCTTGAtagatgagcagatcctttgTGTGCATGGTGGCCTTTCACCTGACATCAAGACTCTGGACCAGATTCGCACCATTGAGCGGAACCAGGAAATTCCCCACAAGGGGGCATTTTGTGATCTCGTCTGGTCTGATCCAGAGGATGTTGACACTTGGGCTATCAGCCCGAGGGGTGCTGGCTGGCTCTTTGGCGCCAAGGTCACCAACGAGtttgtcCATATTAACAACCTGAAGCTGATTTGCCGTGCACATCAGCTGGTTCACGAGGGCTACAAGTTTATGTTCGATGAGAAGCTTGTGACCGTGTGGTCAGCCCCCAACTACTGCTACCGTTGTGGCAACATTGCCTCAATTATGGTGTTTAAGGATGTGAATACACGGGAGCCCAAACTGTTCCGTGCCGTGCCTGATGCAGAGCGAGTCATTCCGCCCAGAACCACGACGCCCTACTTCCTCTGAGGGCGAGATCTTCAGTGCCCACTGTGTCCACCCTCCCCTCTTTCTCATCTTGGtcaacctctcttttttatattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatatatatataaataaaatatgcatcCCCTCTCACCACCCCTTCCCCTGAGATTAGATTATGAGGAACCCTGAGCATGTTGCTAGCCATTTTCAAGAGAAGTGCAAGCTTGTCATGTAGGAATTTGGTGGAAAGTAAGCAGTGCTCCTCTTGgtgctgttttttgttatttaatcatacATGGATTAATCATATGTGGTACTACAActcctataaaaaaaaaa
>XM_034300836.1
AGCCTCTGAGTTGTGACGTAGTTGCACTTCCGTACGCTGTAGAATGAGTTGTTGTTCTTAAAATGGCGCCGTTGGACCTGGATAAGTATGTTGAAATTGCAAGACAGTGTAAATATCTTCCAGAGAACGACCTAAAGGGTGACTTTGTGGACAGAGGGTATTACAGTTTAGAAACTTTCACATACTTGCTAGCACTTAAAGCGAAGTGGCCGGACCGCATCACACTGCTGCGTGGGAATCATGAGAGTAGGCAGATTACACAAGTGTATGGCTTTTATGATGAGTGCCAAACTAAGTATGGAAATGCCAATGCTTGGCGATACTGCACAAAAGTGTTTGATATGCTGACTGTTGCTGCCTTGAtagatgagcagatcctttgTGTGCATGGTGGCCTTTCACCTGACATCAAGACTCTGGACCAGATTCGCACCATTGAGCGGAACCAGGAAATTCCCCACAAGGGGGCATTTTGTGATCTCGTCTGGTCTGATCCAGAGGATGTTGACACTTGGGCTATCAGCCCGAGGGGTGCTGGCTGGCTCTTTGGCGCCAAGGTCACCAACGAGtttgtcCATATTAACAACCTGAAGCTGATTTGCCGTGCACATCAGCTGGTTCACGAGGGCTACAAGTTTATGTTCGATGAGAAGCTTGTGACCGTGTGGTCAGCCCCCAACTACTGCTACCGTTGTGGCAACATTGCCTCAATTATGGTGTTTAAGGATGTGAATACACGGGAGCCCAAACTGTTCCGTGCCGTGCCTGATGCAGAGCGAGTCATTCCGCCCAGAACCACGACGCCCTACTTCCTCTGAGGGCGAGATCTTCAGTGCCCACTGTGTCCACCCTCCCCTCTTTCTCATCTTGGtcaacctctcttttttatattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatatatatataaataaaatatgcatcCCCTCTCACCACCCCTTCCCCTGAGATTAGATTATGAGGAACCCTGAGCATGTTGCTAGCCATTTTCAAGAGAAGTGCAAGCTTGTCATGTAGGAATTTGGTGGAAAGTAAGCAGTGCTCCTCTTGgtgctgttttttgttatttaatcatacATGGATTAATCATATGTGGTACTACAActcctataaaaaaaaaa

Function

symbol description
ppp6c Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit-like isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921938.2 True 1367 mRNA 0.43 7 10460316 10478724
XM_034300836.1 False 1200 mRNA 0.43 5 10460316 10478719

Neighbor

gene id symbol gene type direction distance location
scai scai,LOC107740943 coding downstream 518 10387883 ~ 10459798 (-)
zmat5 zmat5 coding downstream 103218 10349022 ~ 10357098 (-)
m17 LOC108271423 coding downstream 193570 10263922 ~ 10266746 (-)
c9 c9 coding downstream 296716 10147039 ~ 10163600 (-)
ndor1 ndor1 coding downstream 455813 9988777 ~ 10004503 (-)
ungb LOC108280186 coding upstream 29112 10507836 ~ 10511710 (-)
ssh1b NA coding upstream 79512 10558236 ~ 10667122 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding upstream 212520 10691244 ~ 10782990 (-)
mcc mcc,LOC106565572 coding upstream 355733 10834457 ~ 10981914 (-)
LOC113523726 NA coding upstream 668407 11147131 ~ 11151024 (-)
G384643 NA non-coding downstream 80613 10378212 ~ 10379703 (-)
G384639 NA non-coding downstream 98184 10361909 ~ 10362132 (-)
G384627 NA non-coding downstream 114446 10345522 ~ 10345870 (-)
G384561 mmyhl1,mmyhl2,ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768,LOC101071797,LOC108443907,LOC101164155,LOC107083053,LOC106915643,LOC107723326,LOC108444092,LOC108261437,LOC107737926,LOC107083052,LOC102780693,LOC106564289,LOC106564290 non-coding downstream 211459 10188813 ~ 10248857 (-)
G384654 NA non-coding upstream 22097 10500821 ~ 10501060 (-)
G384666 NA non-coding upstream 44512 10523236 ~ 10523465 (-)
G384668 NA non-coding upstream 58483 10537207 ~ 10537663 (-)
G384671 NA non-coding upstream 60274 10538998 ~ 10539209 (-)
G384782 NA non-coding upstream 84320 10563044 ~ 10563380 (-)
LOC113531664 NA other downstream 1204871 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1376232 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1390057 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1451630 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 1620552 8837678 ~ 8839764 (-)
G384811 NA other upstream 127266 10605990 ~ 10606272 (-)
G384960 NA other upstream 599988 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 1067585 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1212510 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2328477 12807201 ~ 12891295 (-)

Expression


Co-expression Network