G384643


Basic Information

Item Value
gene id G384643
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10378212 ~ 10379703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456051
gtgtgtgtaattatatatatttacattatatataaaacacagatcagccacaacattaaaactatctgcctaatattgtgtaggtcccccttgtacCGCGAAAATGGCTTTGACTCGAGAGAGTCAATGGCTTTGACTTGAGTCgaggcatgaactccacaagacctctgaaggtgtgctgtggtatctggcacccaGACGTGAGCAGCTGATCCTTtgagtcctgtaagttgcgaggtggggccttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaaatcaacaccttgaactttttgtcctgaacaatttttgcagtgtggcagggcacattatcctgctgaaagaggccactgccattagggaataatgctgccatgaaggggtgtacttggtctgcaacaatgtttaggtaggtggtacatgtcaaagtaacatccacatgaatgccaggaccgaagttttcccagcagaacattgcccagagcatcaagctgcctctgccagcttgccttcttcccatagtgcatctcttccccaggtaagcgatgcacatgcacccagtCCTctacataatgtaaaagaaaacgtgattcatcagaccaggccactttattccattgctccatggtccagttgtAATGCTCATGTGCctattgtaggtgcttttgagGGGGatggggtcagcatgggcactctgaccggtctgtggctacgcagccccatacgcagcaagctgcaatgcactgtttgttctgacacctttctatcatagccagcatgaacattttcagcaatttgtgctacaatagctcttctgtgggatcagaccagatgaactagccttcactcccaacatgcatcagtgagccttgggctcccatgaccctgtcagcggttcaccagttgtccttccttgtaccacttttggtaggtgctaatcactgcatactgggaacactccacaacatctgccgttttggagatgctctgacccagtcatctagccatcactttggcccttgtcaaagttactcagatccttacacttgcccatttttcctgcttgcaacacatcaacttcgagaagtGACTGTTCATTTGTTCACTTATATCCCACCGCTTGACATCATTgagcgcccatgaccctgtcacaggttcaccggttgtcctaccttggaccacttttggtaggtactaaccaccaCACACTGCGAAAACCTGttattttggagatgctctgaccctgttgtctagccatcacaatttgggccttgccaaagtttttttttttaagaaggtgttgttgctcagatccttacacttacccatttttcctgcttcaagaactgactgttcacttgctgcctaatatattattcacttcacctgtcagtggttttaatgttatggctgatctgtgtgtgtatatatgtttgtacgcacacacacacgcacgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456051 True 1492 lncRNA 0.47 1 10378212 10379703

Neighbor

gene id symbol gene type direction distance location
zmat5 zmat5 coding downstream 21114 10349022 ~ 10357098 (-)
m17 LOC108271423 coding downstream 111466 10263922 ~ 10266746 (-)
c9 c9 coding downstream 214612 10147039 ~ 10163600 (-)
ndor1 ndor1 coding downstream 373709 9988777 ~ 10004503 (-)
ier5l ier5l,LOC108228905 coding downstream 610177 9765740 ~ 9768035 (-)
scai scai,LOC107740943 coding upstream 8180 10387883 ~ 10459798 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding upstream 80613 10460316 ~ 10478724 (-)
ungb LOC108280186 coding upstream 128133 10507836 ~ 10511710 (-)
ssh1b NA coding upstream 178533 10558236 ~ 10667122 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding upstream 311541 10691244 ~ 10782990 (-)
G384639 NA non-coding downstream 16080 10361909 ~ 10362132 (-)
G384627 NA non-coding downstream 32342 10345522 ~ 10345870 (-)
G384561 mmyhl1,mmyhl2,ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768,LOC101071797,LOC108443907,LOC101164155,LOC107083053,LOC106915643,LOC107723326,LOC108444092,LOC108261437,LOC107737926,LOC107083052,LOC102780693,LOC106564289,LOC106564290 non-coding downstream 129355 10188813 ~ 10248857 (-)
LOC117596265 NA non-coding downstream 140816 10235568 ~ 10237396 (-)
LOC113531315 NA non-coding downstream 206617 10169114 ~ 10171595 (-)
G384654 NA non-coding upstream 121118 10500821 ~ 10501060 (-)
G384666 NA non-coding upstream 143533 10523236 ~ 10523465 (-)
G384668 NA non-coding upstream 157504 10537207 ~ 10537663 (-)
G384671 NA non-coding upstream 159295 10538998 ~ 10539209 (-)
G384782 NA non-coding upstream 183341 10563044 ~ 10563380 (-)
LOC113531664 NA other downstream 1122767 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1294128 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1307953 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1369526 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 1538448 8837678 ~ 8839764 (-)
G384811 NA other upstream 226287 10605990 ~ 10606272 (-)
G384960 NA other upstream 699009 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 1166606 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1311531 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2427498 12807201 ~ 12891295 (-)

Expression


Co-expression Network