c9 (c9)


Basic Information

Item Value
gene id c9
gene name c9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10147039 ~ 10163600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922423.2
CTATGGACTAGACACATGGGAGTTCTTCATGCTCTGTTGCCATCTGTCGCAGAACTGATATATAACAACATTGTCAGGAGAATTCAAGGCAGGAATGATGTACTAAAGGCCCCCCCACACACGAACAGACACCAGTCTACCAGTCCTGGCCGAAGTCTCACAATGAGGACATTGATGCTAACAGCTGTGTTTACACACTGCTTCCTGCAGCTAACTGCTGGAATGAGTGTGGGTGATTTCATGCAAGGGTCCAAAAGAGAAGCAAGGGAAGTAGGACCAGCACCTATTGACTGCAAAATGACTGCTTGGTCTGCGTGGGCGCCTTGTGACCCTTGCACTAAAATTATGCATCGTTCCAGGGGTATTGAATCATTTGGGCAGTTTGGAGGTCTAAGATGTGTAGAACccattggagaaaaaaaaccctgcacaCCAACGACTCAATGTGTGGAAGATCCACCACCTGTCTGCTCAGTTAATGAGTTCTTCTGTGAATCAGGCTTCTGTATTAAAAACCGGCTGAAGTGCAATGGGGACAATGACTGCGGTGACTTCTCTGATGAGGACGAGTGTGATAAGATCCGCTCTCCATGTGGCAATGTGGCCGTGACTGAATCAGACATCGGTCTGGGTGCTGGATACGGCATCAACATTCTAGGCTCAGGCCCTCGCATGAACCCATTTAATAACAAAGTATATAATGGAATATGTGATCGTGTCAAGGAGCCATCCACACTGACCTACAACAGGCTGCCCTGGAATGTTGCTGTCCTTAACTATGAGACATTAGTAGAAGAGGCTACTTCTAAAGAGGTCTACAAAGACACTCACTCACTGCTCAGCGAAATCACCCGTGATATCACTACCAAAACAAGCATAGGATTATCCTTCAAGTTCACACCTACTGAGCCATCTGAAAAGAATGCCACAGCTCTCCAGAGTGCCTCAGGTGGATTTAACGTCGGGACTGACAAGAGAGAAATGATCAAAACTATCACAGACCACAGCACCACTAAGGAAAAGTCCTTCTTCAGGGTGAAGGGCAAAGTGCAACTAGGCACATATAGAATGAGGTCTCGAGGTCTGGAAGTCTCTCAGACATTCTTGGATGACGTAGATGCACTGCCTATAGAATACGAGAAGGGACAGTATTTTGGCTTCTTGGAGGATTATGGGACACATTACACCAAGAATGGAAGAGCAGGGGGAGAATATGAACTTGTATATGTCCTCAATAGTAAAGTAATCAAAGACAAGCAGAAGACAGAAACTTTGCTGAAGGATTGCTTGAAAATTGGGATTAACGCAGATTTCCAGTTCAGTGGAAATAATTCAGGAAGTTTAGTGCCAAGCCAAATAGTACCAAAAGACGACTGTACAGAGCTGAAACATGATAACACAGACGAGACTACAAGTGAGCCATTGATTGATAAGGTGATCAGTGCAGTGAAGGGAGGCTCCCCAGCATCAGCAGCAGCCATGAAGTCTCAGCTCAGTAAAGATGGTGTGCTGAACTGGAATTATTACGTGGAGTGGGCAAGGACACTCCCAGACCTGCCTGCACTCATCCACagtgatCCTGATCCCATCTACAATGCGATCCCTCTGAGCTTCCCTGATGCCCAGCCGAGGAGGGTGAACTTGCAGAGGGCCCTGAATGAGTACATGGcagagtacagtgtgtgtaagtgccAGCCATGTCAGAATGGTGGCACCGTGGCCCAGGTAGATGGCAATTGCATATGCCTGTGCCCGTTGCACTTCGAAGGCCTTGCCTGTGAGACCATCCGTCATGACCTACTTAAAGatAATGACCAGCCCATAGAACAGCTGGGGAACTGGGGCTGCTGGTCTTCCTTGTCTAGCTGCAGTGGAGGACGTCAGCGCCGCACTCGATCCTGCAAAACAGGTGGCATCGCAGGAGCGACCTGCAAAGGAGACGCAGTCAGCGAGGAATATTGTTAATGCTGTGTGGGCTCTCgctttctcagtctctctcgctagctcatactcacacacacatacacacacacacacacttaaaaaggCATTGCATTAAATATCCTTTGTTTCCCATATAAAAAACAGTTTCCAATAAAATGTCAGCCAGAATCAAA
>XM_034300630.1
ATGTGACCATATGACATGATTCTTTGGAAAAGGCCCGaatggcctgtgggaagaagctcctcctcattctctctgtgctGTCCTTCAGGAAGCGGAAGCGTATTATGCACGTATGTACTAAAGGCCCCCCCACACACGAACAGACACCAGTCTACCAGTCCTGGCCGAAGTCTCACAATGAGGACATTGATGCTAACAGCTGTGTTTACACACTGCTTCCTGCAGCTAACTGCTGGAATGAGTGTGGGTGATTTCATGCAAGGGTCCAAAAGAGAAGCAAGGGAAGTAGGACCAGCACCTATTGACTGCAAAATGACTGCTTGGTCTGCGTGGGCGCCTTGTGACCCTTGCACTAAAATTATGCATCGTTCCAGGGGTATTGAATCATTTGGGCAGTTTGGAGGTCTAAGATGTGTAGAACccattggagaaaaaaaaccctgcacaCCAACGACTCAATGTGTGGAAGATCCACCACCTGTCTGCTCAGTTAATGAGTTCTTCTGTGAATCAGGCTTCTGTATTAAAAACCGGCTGAAGTGCAATGGGGACAATGACTGCGGTGACTTCTCTGATGAGGACGAGTGTGATAAGATCCGCTCTCCATGTGGCAATGTGGCCGTGACTGAATCAGACATCGGTCTGGGTGCTGGATACGGCATCAACATTCTAGGCTCAGGCCCTCGCATGAACCCATTTAATAACAAAGTATATAATGGAATATGTGATCGTGTCAAGGAGCCATCCACACTGACCTACAACAGGCTGCCCTGGAATGTTGCTGTCCTTAACTATGAGACATTAGTAGAAGAGGCTACTTCTAAAGAGGTCTACAAAGACACTCACTCACTGCTCAGCGAAATCACCCGTGATATCACTACCAAAACAAGCATAGGATTATCCTTCAAGTTCACACCTACTGAGCCATCTGAAAAGAATGCCACAGCTCTCCAGAGTGCCTCAGGTGGATTTAACGTCGGGACTGACAAGAGAGAAATGATCAAAACTATCACAGACCACAGCACCACTAAGGAAAAGTCCTTCTTCAGGGTGAAGGGCAAAGTGCAACTAGGCACATATAGAATGAGGTCTCGAGGTCTGGAAGTCTCTCAGACATTCTTGGATGACGTAGATGCACTGCCTATAGAATACGAGAAGGGACAGTATTTTGGCTTCTTGGAGGATTATGGGACACATTACACCAAGAATGGAAGAGCAGGGGGAGAATATGAACTTGTATATGTCCTCAATAGTAAAGTAATCAAAGACAAGCAGAAGACAGAAACTTTGCTGAAGGATTGCTTGAAAATTGGGATTAACGCAGATTTCCAGTTCAGTGGAAATAATTCAGGAAGTTTAGTGCCAAGCCAAATAGTACCAAAAGACGACTGTACAGAGCTGAAACATGATAACACAGACGAGACTACAAGTGAGCCATTGATTGATAAGGTGATCAGTGCAGTGAAGGGAGGCTCCCCAGCATCAGCAGCAGCCATGAAGTCTCAGCTCAGTAAAGATGGTGTGCTGAACTGGAATTATTACGTGGAGTGGGCAAGGACACTCCCAGACCTGCCTGCACTCATCCACagtgatCCTGATCCCATCTACAATGCGATCCCTCTGAGCTTCCCTGATGCCCAGCCGAGGAGGGTGAACTTGCAGAGGGCCCTGAATGAGTACATGGcagagtacagtgtgtgtaagtgccAGCCATGTCAGAATGGTGGCACCGTGGCCCAGGTAGATGGCAATTGCATATGCCTGTGCCCGTTGCACTTCGAAGGCCTTGCCTGTGAGACCATCCGTCATGACCTACTTAAAGatAATGACCAGCCCATAGAACAGCTGGGGAACTGGGGCTGCTGGTCTTCCTTGTCTAGCTGCAGTGGAGGACGTCAGCGCCGCACTCGATCCTGCAAAACAGGTGGCATCGCAGGAGCGACCTGCAAAGGAGACGCAGTCAGCGAGGAATATTGTTAATGCTGTGTGGGCTCTCgctttctcagtctctctcgctagctcatactcacacacacatacacacacacacacacttaaaaaggCATTGCATTAAATATCCTTTGTTTCCCATATAAAAAACAGTTTCCAATAAAATGTCAGCCAGAATCAAA

Function

symbol description
c9 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in extracellular region; membrane; and other organism cell membrane. Predicted to be integral component of membrane. Predicted to be part of membrane attack complex. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in age related macular degeneration 15 and complement component 9 deficiency. Orthologous to human C9 (complement C9).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K04000 C9; complement component 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922423.2 False 2117 mRNA 0.47 12 10147039 10162698
XM_034300630.1 True 2132 mRNA 0.48 13 10147039 10163600

Neighbor

gene id symbol gene type direction distance location
ndor1 ndor1 coding downstream 142536 9988777 ~ 10004503 (-)
ier5l ier5l,LOC108228905 coding downstream 379004 9765740 ~ 9768035 (-)
crata crat,crata coding downstream 404148 9729735 ~ 9742891 (-)
fkbp15a fkbp15 coding downstream 418424 9707216 ~ 9728615 (-)
LOC113531681 NA coding downstream 462266 9684647 ~ 9684773 (-)
m17 LOC108271423 coding upstream 100322 10263922 ~ 10266746 (-)
zmat5 zmat5 coding upstream 185422 10349022 ~ 10357098 (-)
scai scai,LOC107740943 coding upstream 224283 10387883 ~ 10459798 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding upstream 296716 10460316 ~ 10478724 (-)
ungb LOC108280186 coding upstream 344236 10507836 ~ 10511710 (-)
LOC117596261 NA non-coding downstream 96819 10047972 ~ 10050220 (-)
G384280 NA non-coding downstream 333816 9813007 ~ 9813223 (-)
G384271 NA non-coding downstream 350385 9795926 ~ 9796654 (-)
G384260 NA non-coding downstream 360940 9780583 ~ 9786099 (-)
LOC117596221 NA non-coding downstream 720770 9424980 ~ 9426269 (-)
LOC113531315 NA non-coding upstream 5514 10169114 ~ 10171595 (-)
G384561 mmyhl1,mmyhl2,ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768,LOC101071797,LOC108443907,LOC101164155,LOC107083053,LOC106915643,LOC107723326,LOC108444092,LOC108261437,LOC107737926,LOC107083052,LOC102780693,LOC106564289,LOC106564290 non-coding upstream 25213 10188813 ~ 10248857 (-)
LOC117596265 NA non-coding upstream 71968 10235568 ~ 10237396 (-)
G384627 NA non-coding upstream 181922 10345522 ~ 10345870 (-)
G384639 NA non-coding upstream 198309 10361909 ~ 10362132 (-)
LOC113531664 NA other downstream 891594 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1062955 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1076780 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1138353 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 1307275 8837678 ~ 8839764 (-)
G384811 NA other upstream 442390 10605990 ~ 10606272 (-)
G384960 NA other upstream 915112 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 1382709 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1527634 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2643601 12807201 ~ 12891295 (-)

Expression


Co-expression Network