crata (crat,crata)


Basic Information

Item Value
gene id crata
gene name crat,crata
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9729735 ~ 9742891 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921889.2
AGCGGGTGTGTGCAGTAGTGTGGTAGTTTGTGAGAACGCGGTTTTTTCACAGGACTGGGTTTGTTTTTGGGGGCGTTTCAGTCAAAGCACGTCTGCTATGACTCTGCTGGGGATTTTGTCCAGGGCCATGACGAAGGCTGGCATGGTGAAGCCATCCTCCCTGGTGAAGCCGGTGTCTTTGACTAAGATACCTGGTCGTTATCTGGCTCATCAGGAGTCTCTCCCAAAGCTGCCAGTGCCTCCTCTGAAACAGACATGTGACCGCTACCTGGCCGCGCTGGAGCCCATAGTGGATGCTGAGGagctgaaacacacatgcaGGCTGTTGGAGGAGTTTCAGCTGCCCGGTGGAGTGGGAGAAAGACTGCAGAACACCCTGGAGAGGAGGGCAAGCAAGCTGGAAAACTGGctctctgaCTGGTGGTTAAAGACAGCATATCTGGACTACCGGATGCCTGTGGTTGTCCACTCGAGTCCTGGAGTCGTCCTTCCTCGCTTACAATTTAGTGACTGTCGAGGTCAAATGAGATATGCGGCTAAACTGATTGCAGGAGTTTTGGATTTCAAGACTATGATTGACAAtgaaacGTTACCGGTGGAGTATCTTGGTGGGAAGCCGCTGTGTATGAATCAGTATTATCAGGTTCTGTCCTCCTGCCGCATACCCGGGACCAACAGCGACTCGGTGGTCAATCACGCTTTGAGCAAGAGACCTCCTACTCACATCACTGTGGTGCACAACTTCCAGTTCTTTGTGCTGGATGTGTACAACAGTGATGGCACACCGCTGACGGTAGATCAACTCTATATTCAGCTGGAGAAAATCTGTAACTCTTCCCTGCAGAGCAACAAGGAGCCGATCGGCATCCTCACCTCCAATCACCGTAACAGCTGGGGCAAAGCCTACGCCAACCTCATTAAAGACAGAACGAATAAGGAGTCAGTGCAGGCTATTCAGAAGAGCATCTTTACCGTGTGTCTGGACGCTCCAATGCCCCGGGTCTCAGACGAGATGTACCGCACTCGAGCAGCTGTGCAGATGCTGCATGGAGGAGGCAGCCGGTGGAACAGTGGAAACCGCTGGTTcgataaaacacttcagTTTATCATTGGTGAAGATGGGACATGCGGTATCATCTATGAACACGCCCCTGCAGAAGGTCCTCCAATCGTGGCCCTGATTGATCACGTGGTGGAGTACACAAACAAGGCAGAGATGATTCGTACACCCATGGTTCCTCTGCCCATGCCTCAGAAACTGCACTTCAACATCACCCCAGAGATTAAAAGCGACATCGAGGAGGCCAAGCAGAACATGAATATAATGGTTCAGGACTTGGATGTGAGAGTCATTGTGTTCTCCCACTTTGGTAAAAATGTTCCAAAGTCTTATAGGATGAGTCCTGACGCATTCATTCAGGTGGCTCTACAGCTGGCTTATTACAGGCTGTACAAGCGTTGCTGTGCCACGTACGAGAGTGCCTCTCTGCGCATGTTCAAACTGGGCCGAACAGACACCATACGCTCAGCATCCATCAACTCTGCCAACTTTGTCCGAGCCATGGACGACCCTGTCAAGCAGAGCCCAGAGAAGGTGACTCTGCTGGAGAAGGCAGTGAAGGCACACAGAGCGTACACAGACATGgcaATCCGTGGGCAAGCCATCGACAGGCATTTGCTTGGCCTGAAGCTGCAGGCTGTTGAAGACTTGTCAGCCCTGCCAGAAATCTTCACGGACACGTCTTATGCCAAAGCCAACCACTACAACCTTTCCACCAGCCAGGTCCCAGCTAAGACCGACTGCGTGATGTGTTTCGGCCCAGTGGTTCCTGATGGCTACGGCGTCTGCTACAACCCCATGGAGAAACACATTAACTTTGCAGTCTCTGCTTTTAACAGCTGTGCAGACACCAGCGCCACACGACTGGCCCACGCTCTGGAGGACGCTCTGCTGGACATGAAGAGCCTGCTGGATCAGACACTCAAATCCAAGCTGTGAGGACAGAGACGCTCACTACAGACTCTGTGGCCATTACGCTGAAGTACATGAGAGGACGTTAAGTCCAAGATGAAAATTTGATCCTTTAATGGAGCATGTGTCAATCACTTTGCACAGAGCCATTGTTTGGAATGATATGAATTTTTATATTCTTGTACAGACCTGGTTAATGAAGTAAGTGTTTCAAAGAGCTGCCACTTTACTGgttgttttttcagcagtaGGCAGAAAATTACCTACAAAATTACTTACTGTTAAGAGACTTGTGGCATTTCTACATTTCATCTTCCATGTAGCAGAGCTTATGTCCGTTAAAAATGgcgcatttcatttttttattgatcTTAAATCATGAAAACTGAGAATAAGTGATAAGTCAGTGAAGTGGGACTTATTATGTGATCAGTTGCCACTATgccagttgtgtgtgtgtgagagatattgtgatttaaaatttaatttggtGAATCAGATAATTGCTGTATACTTTAAATACTGAGGCAGAAATATTAGTTTTTCACTTATTTGCACAGTGATTTGTACAGGACTctactgtaaattatttaacattcgTGTTATAATGAGTACCATGTGCTGCAGATTGTAAACGCTATACTACTGCATggcctctcctttttttttgacttttttttttttttgtgtcgtGATTAAGGTGCCTTGTAACTACAAGTGGCAAAATAATTTCTACTCTAAAAGAAAACAGTTCATATCTGATGTTCATTCAGAAAGTTCAACAATAAAAGAGATTGACTAAAAGTCAGTGTCTGGTAGTAAGTGGCTCTATCTCTAAATAGGGCTTGGTTATATAACAATATGATAACAGTATTATGAGTTACACCACAGTATACTTTCCAACTGTATATCACCAATAATTTGACAAAAATTTCACAATACTCACTTGATACAGTAATAagtgcctgattttttttaaatgtttaattcattGCCTCTTGTAACTTGTTAAACTATTTAcacttttgtaaacatttttagaaagaaTACATTTTACCTTTCAGTTTTTCATGTGGCACTACAGTTTTGCTTATTGTGATACATGTCGTGAATGTGAAACTGCCTTCCACTATCATGACATTATCTTTCTGACATTTCATCTACTTTTACTAACAGTGCAGCTACAGTCAGGTTGCCTGTGgttacataattaaataaaagaaataaagaaaa

Function

symbol description
crata Predicted to enable carnitine O-acetyltransferase activity. Predicted to be involved in carnitine metabolic process, CoA-linked. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human CRAT (carnitine O-acetyltransferase).
crat Enables acyl-CoA oxidase activity and carnitine O-acetyltransferase activity. Involved in carnitine metabolic process, CoA-linked and fatty acid metabolic process. Located in mitochondrion and peroxisome. Implicated in neurodegeneration with brain iron accumulation.

NR:

description
carnitine O-acetyltransferase

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00624 E2.3.1.7; carnitine O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921889.2 True 3205 mRNA 0.45 15 9729735 9742891

Neighbor

gene id symbol gene type direction distance location
fkbp15a fkbp15 coding downstream 1120 9707216 ~ 9728615 (-)
rpl12 rpl12,LOC107597107 coding downstream 42045 9682276 ~ 9687690 (-)
LOC113531681 NA coding downstream 44962 9684647 ~ 9684773 (-)
LOC113531679 NA coding downstream 45337 9684272 ~ 9684398 (-)
LOC113531682 NA coding downstream 46630 9682981 ~ 9683105 (-)
ier5l ier5l,LOC108228905 coding upstream 22849 9765740 ~ 9768035 (-)
ndor1 ndor1 coding upstream 245886 9988777 ~ 10004503 (-)
c9 c9 coding upstream 404148 10147039 ~ 10163600 (-)
m17 LOC108271423 coding upstream 521031 10263922 ~ 10266746 (-)
zmat5 zmat5 coding upstream 606131 10349022 ~ 10357098 (-)
LOC117596221 NA non-coding downstream 303466 9424980 ~ 9426269 (-)
LOC117596217 NA non-coding downstream 413130 9311773 ~ 9316605 (-)
LOC113531656 LOC106579430,LOC107088658 non-coding downstream 470919 9256495 ~ 9258816 (-)
G384027 NA non-coding downstream 511537 9217990 ~ 9218198 (-)
G384020 NA non-coding downstream 520900 9208632 ~ 9208835 (-)
G384260 NA non-coding upstream 37692 9780583 ~ 9786099 (-)
G384271 NA non-coding upstream 53035 9795926 ~ 9796654 (-)
G384280 NA non-coding upstream 70116 9813007 ~ 9813223 (-)
LOC117596261 NA non-coding upstream 305081 10047972 ~ 10050220 (-)
LOC113531315 NA non-coding upstream 426223 10169114 ~ 10171595 (-)
LOC113531664 NA other downstream 474290 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 645651 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 659476 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 721049 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 889971 8837678 ~ 8839764 (-)
G384811 NA other upstream 863099 10605990 ~ 10606272 (-)
G384960 NA other upstream 1335821 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 1803418 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1948343 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 3064310 12807201 ~ 12891295 (-)

Expression


Co-expression Network