LOC117596261


Basic Information

Item Value
gene id LOC117596261
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10047972 ~ 10050220 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577442.1
gatgctcacAAAAGATGCTAAAAGTTGGCAGAAACAAGTAAACAACAGCTTGGGAGCAGAGAGCGTGCTGAGCTCATACGTGCCAGCACCATCTGGGCGTGAATAACGAAATATCGCCAGAACAAACAACACACCAGTGAAACAGCAATGACAGTACCATAATGGAGCTTACCTGCACAGCAGGCCTGCTCAGCGGAGACCGTTTCAATTTGCTCAAAGGCTCCAGTTTGGCTTTGACAAGACAAATGGCAAAATATTGCAGATCTTTTGCAGCTATAGATTGTCTCAAAGGCACTATACAGATATCAGTGCCTTTTGGCAGAGAGCAAGCAGATCTCCAAAGATGTTCCCTTTGCCCCAACACAACGGTGCAGAGTAATCCATCTCTGTCTCGGTACTCCCCAAAATTATCCTCCCTATAAAAAGAGGCCATCCCAGATGTGAAAGCAACATCGCACCCTCTCCGATCAAACTCACAGAAGGgtcagcttctgaccaatccagGGCTTTAAAAGTTTAAGGATAGAAAGAAACATAGGCTATTATATGAAGGTCAGTACAGGTTAAGTTATCAAAAAACAGAGATGAGCTTTTCCAGGGACTAAATGAGTGTCCTTGTAAAGAGGGCAATGAAACATAATCATGACTAATATATTTCTGCAGCTGTTTCCTTGAGACAATACAGAATGAAACATTATTGCTCATCAGGGAAAAGTCTGTTGAACATTAGCGTCTCAATCTGCAGCGTTAACCTAAATCTATTACCTCCCTTACCTTAAGTTCACCTTCACAGACATTCAAACAGGGGCTTTGCTCTGTACATCTATAAGCAAAACCATCATTAAAACCATCATTGCCTATATGAGCTACAAATATATCAGTGACCATATACTAGCAGCAAATTTAGTTCTTCCTAATTATTCATTAGTGAATTCATTAAGGAATGCATGTAATTTGACATGAATTATTGATACAGTACATGAAAGATCACACGCTAGATCatagaataagaaaagaaaaactgtccgggttcaaaaaatattttcactcacATGAGAGGACTCAAAGTCACAAAAGGGCTTAACATAACCCAGTGTAAAATATCACATGTCCAAAATGGGTGGATCAAGTGAAAGCCAGCTGGAAACACAAAGCTTTGCATCTTGAAGGCTATAACATTAAAGCAGGTCATTTTTCACACTGGGAGACAGCTAATGTGGCTTATGTCTAATCTTTACTCCCCAAAAGACAGAGGAAGGTTGCATTGAGTGCCAGCAGAATCACACGGCCCCCACTGCTAATGGTAAACGACCGTGGAGATAAATGCTACGTGTCAACACAATAGACATCAAAAGAGACAAATTAAGCTAATCCTAGGTCCCTAAATAGCAAGACATGCATCTTTTACCTAAAATAGCAATGTACTGCTAACATTAACAATTACCACAAACAATGGATTAAAGCAGATATAGTAACTGGtcaaatattacataataaacacagaacatggtattaatgtttaacatgaacatttagGACAGATCGTTcaaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577442.1 True 1556 lncRNA 0.39 3 10047972 10050220

Neighbor

gene id symbol gene type direction distance location
ndor1 ndor1 coding downstream 43469 9988777 ~ 10004503 (-)
ier5l ier5l,LOC108228905 coding downstream 279937 9765740 ~ 9768035 (-)
crata crat,crata coding downstream 305081 9729735 ~ 9742891 (-)
fkbp15a fkbp15 coding downstream 319357 9707216 ~ 9728615 (-)
LOC113531681 NA coding downstream 363199 9684647 ~ 9684773 (-)
c9 c9 coding upstream 96819 10147039 ~ 10163600 (-)
m17 LOC108271423 coding upstream 213702 10263922 ~ 10266746 (-)
zmat5 zmat5 coding upstream 298802 10349022 ~ 10357098 (-)
scai scai,LOC107740943 coding upstream 337663 10387883 ~ 10459798 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding upstream 410096 10460316 ~ 10478724 (-)
G384280 NA non-coding downstream 234749 9813007 ~ 9813223 (-)
G384271 NA non-coding downstream 251318 9795926 ~ 9796654 (-)
G384260 NA non-coding downstream 261873 9780583 ~ 9786099 (-)
LOC117596221 NA non-coding downstream 621703 9424980 ~ 9426269 (-)
LOC117596217 NA non-coding downstream 731367 9311773 ~ 9316605 (-)
LOC113531315 NA non-coding upstream 118894 10169114 ~ 10171595 (-)
G384561 mmyhl1,mmyhl2,ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768,LOC101071797,LOC108443907,LOC101164155,LOC107083053,LOC106915643,LOC107723326,LOC108444092,LOC108261437,LOC107737926,LOC107083052,LOC102780693,LOC106564289,LOC106564290 non-coding upstream 138593 10188813 ~ 10248857 (-)
LOC117596265 NA non-coding upstream 185348 10235568 ~ 10237396 (-)
G384627 NA non-coding upstream 295302 10345522 ~ 10345870 (-)
G384639 NA non-coding upstream 311689 10361909 ~ 10362132 (-)
LOC113531664 NA other downstream 792527 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 963888 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 977713 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1039286 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 1208208 8837678 ~ 8839764 (-)
G384811 NA other upstream 555770 10605990 ~ 10606272 (-)
G384960 NA other upstream 1028492 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 1496089 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1641014 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2756981 12807201 ~ 12891295 (-)

Expression


Co-expression Network