Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596265 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 10235568 ~ 10237396 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577444.1 | True | 804 | lncRNA | 0.42 | 5 | 10235568 | 10237396 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| c9 | c9 | coding | downstream | 71968 | 10147039 ~ 10163600 (-) |
| ndor1 | ndor1 | coding | downstream | 231065 | 9988777 ~ 10004503 (-) |
| ier5l | ier5l,LOC108228905 | coding | downstream | 467533 | 9765740 ~ 9768035 (-) |
| crata | crat,crata | coding | downstream | 492677 | 9729735 ~ 9742891 (-) |
| fkbp15a | fkbp15 | coding | downstream | 506953 | 9707216 ~ 9728615 (-) |
| m17 | LOC108271423 | coding | upstream | 26526 | 10263922 ~ 10266746 (-) |
| zmat5 | zmat5 | coding | upstream | 111626 | 10349022 ~ 10357098 (-) |
| scai | scai,LOC107740943 | coding | upstream | 150487 | 10387883 ~ 10459798 (-) |
| ppp6c | ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 | coding | upstream | 222920 | 10460316 ~ 10478724 (-) |
| ungb | LOC108280186 | coding | upstream | 270440 | 10507836 ~ 10511710 (-) |
| LOC113531315 | NA | non-coding | downstream | 63973 | 10169114 ~ 10171595 (-) |
| LOC117596261 | NA | non-coding | downstream | 185348 | 10047972 ~ 10050220 (-) |
| G384280 | NA | non-coding | downstream | 422345 | 9813007 ~ 9813223 (-) |
| G384271 | NA | non-coding | downstream | 438914 | 9795926 ~ 9796654 (-) |
| G384260 | NA | non-coding | downstream | 449469 | 9780583 ~ 9786099 (-) |
| G384627 | NA | non-coding | upstream | 108126 | 10345522 ~ 10345870 (-) |
| G384639 | NA | non-coding | upstream | 124513 | 10361909 ~ 10362132 (-) |
| G384643 | NA | non-coding | upstream | 140816 | 10378212 ~ 10379703 (-) |
| G384654 | NA | non-coding | upstream | 263425 | 10500821 ~ 10501060 (-) |
| G384666 | NA | non-coding | upstream | 285840 | 10523236 ~ 10523465 (-) |
| LOC113531664 | NA | other | downstream | 980123 | 9240716 ~ 9255445 (-) |
| f11r.1 | f11r | other | downstream | 1151484 | 9073752 ~ 9084084 (-) |
| ubash3ba | ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 | other | downstream | 1165309 | 9020715 ~ 9070259 (-) |
| LOC113531288 | NA | other | downstream | 1226882 | 8919410 ~ 9008686 (-) |
| timm8b | timm8b,LOC107598437,LOC107717885 | other | downstream | 1395804 | 8837678 ~ 8839764 (-) |
| G384811 | NA | other | upstream | 368594 | 10605990 ~ 10606272 (-) |
| G384960 | NA | other | upstream | 841316 | 11078712 ~ 11083941 (-) |
| map1b | map1b,LOC107597920 | other | upstream | 1308913 | 11546309 ~ 11627686 (-) |
| LOC113531030 | NA | other | upstream | 1453838 | 11691234 ~ 11698544 (-) |
| garnl3 | garnl3,LOC107700942 | other | upstream | 2569805 | 12807201 ~ 12891295 (-) |
