Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034300836.1 |
| length | 1200 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | ppp6c |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 10460316 ~ 10478724 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0001878 | response to yeast | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004722 | protein serine/threonine phosphatase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU456051 | lncRNA | downstream | 80613 | 10378212 ~ 10379703 (-) | True | G384643 |
| TU456043 | lncRNA | downstream | 98184 | 10361909 ~ 10362132 (-) | True | G384639 |
| TU456026 | lncRNA | downstream | 114446 | 10345522 ~ 10345870 (-) | True | G384627 |
| TU455937 | lncRNA | downstream | 211459 | 10211954 ~ 10248857 (-) | False | G384561 |
| TU456062 | lncRNA | upstream | 22102 | 10500821 ~ 10501060 (-) | True | G384654 |
| TU456074 | lncRNA | upstream | 44517 | 10523236 ~ 10523465 (-) | True | G384666 |
| TU456076 | lncRNA | upstream | 58488 | 10537207 ~ 10537663 (-) | True | G384668 |
| TU456079 | lncRNA | upstream | 60279 | 10538998 ~ 10539209 (-) | True | G384671 |
| TU456192 | lncRNA | upstream | 84325 | 10563044 ~ 10563380 (-) | True | G384782 |
| XM_026921926.2 | mRNA | downstream | 518 | 10387883 ~ 10459798 (-) | False | scai |
| XM_026921925.2 | mRNA | downstream | 518 | 10387883 ~ 10459798 (-) | False | scai |
| XM_026921927.2 | mRNA | downstream | 520 | 10387883 ~ 10459796 (-) | False | scai |
| XM_026921924.2 | mRNA | downstream | 520 | 10387883 ~ 10459796 (-) | False | scai |
| XM_026921919.2 | mRNA | downstream | 19923 | 10387883 ~ 10440393 (-) | False | scai |
| XM_034300812.1 | mRNA | upstream | 29117 | 10507836 ~ 10511710 (-) | False | ungb |
| XM_026922417.2 | mRNA | upstream | 29117 | 10507836 ~ 10511710 (-) | True | ungb |
| XM_026921990.2 | mRNA | upstream | 79517 | 10558236 ~ 10667122 (-) | True | ssh1b |
| XM_026921991.2 | mRNA | upstream | 79517 | 10558236 ~ 10666857 (-) | False | ssh1b |
| XM_026921992.2 | mRNA | upstream | 80846 | 10559565 ~ 10667122 (-) | False | ssh1b |
| XR_003403283.1 | other | downstream | 775543 | 9684647 ~ 9684773 (-) | True | LOC113531681 |
| XR_003403281.1 | other | downstream | 775918 | 9684272 ~ 9684398 (-) | True | LOC113531679 |
| XR_003403284.2 | other | downstream | 777211 | 9682981 ~ 9683105 (-) | True | LOC113531682 |
| XR_003403282.1 | other | downstream | 777583 | 9682607 ~ 9682733 (-) | True | LOC113531680 |
| XR_004577368.1 | other | downstream | 1205141 | 9240716 ~ 9255175 (-) | False | LOC113531664 |
| TU456221 | other | upstream | 127271 | 10605990 ~ 10606272 (-) | True | G384811 |
| TU456386 | other | upstream | 599993 | 11078712 ~ 11083941 (-) | True | G384960 |
| XR_004577405.1 | other | upstream | 1142943 | 11621662 ~ 11627582 (-) | False | map1b |
| XR_004577404.1 | other | upstream | 1142943 | 11621662 ~ 11627522 (-) | False | map1b |
| XR_003403212.2 | other | upstream | 1212515 | 11691234 ~ 11698544 (-) | False | LOC113531030 |
