Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403282.1 |
| length | 127 |
| RNA type | ncRNA |
| GC content | 0.54 |
| exon number | 1 |
| gene id | LOC113531680 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 9682607 ~ 9682733 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577388.1 | lncRNA | downstream | 256338 | 9424980 ~ 9426269 (-) | True | LOC117596221 |
| XR_004577382.1 | lncRNA | downstream | 366002 | 9311773 ~ 9316605 (-) | False | LOC117596217 |
| XR_004577383.1 | lncRNA | downstream | 366002 | 9311773 ~ 9316605 (-) | True | LOC117596217 |
| XR_003403273.2 | lncRNA | downstream | 423791 | 9256495 ~ 9258816 (-) | True | LOC113531656 |
| TU455285 | lncRNA | downstream | 427171 | 9254201 ~ 9255436 (-) | False | LOC113531664 |
| TU455572 | lncRNA | upstream | 97850 | 9780583 ~ 9786099 (-) | True | G384260 |
| TU455583 | lncRNA | upstream | 113193 | 9795926 ~ 9796654 (-) | True | G384271 |
| TU455592 | lncRNA | upstream | 130274 | 9813007 ~ 9813223 (-) | True | G384280 |
| XR_004577442.1 | lncRNA | upstream | 365239 | 10047972 ~ 10050220 (-) | True | LOC117596261 |
| XR_003403245.2 | lncRNA | upstream | 486381 | 10169114 ~ 10171595 (-) | True | LOC113531315 |
| XM_026922274.2 | mRNA | downstream | 29463 | 9648202 ~ 9653144 (-) | True | ccn1l1 |
| XM_026922136.2 | mRNA | downstream | 44887 | 9624315 ~ 9637720 (-) | False | lmo4a |
| XM_026922135.2 | mRNA | downstream | 46405 | 9624315 ~ 9636202 (-) | False | lmo4a |
| XM_026922137.2 | mRNA | downstream | 48263 | 9624315 ~ 9634344 (-) | True | lmo4a |
| XM_026922216.2 | mRNA | downstream | 142251 | 9525686 ~ 9540356 (-) | True | LOC113531455 |
| XM_026921643.2 | mRNA | upstream | 24483 | 9707216 ~ 9728615 (-) | False | fkbp15a |
| XM_026921642.2 | mRNA | upstream | 24483 | 9707216 ~ 9728615 (-) | True | fkbp15a |
| XM_026921889.2 | mRNA | upstream | 47002 | 9729735 ~ 9742891 (-) | True | crata |
| XM_026921530.2 | mRNA | upstream | 83007 | 9765740 ~ 9768035 (-) | True | ier5l |
| XM_026921532.2 | mRNA | upstream | 306044 | 9988777 ~ 10004503 (-) | True | ndor1 |
| XR_004577369.1 | other | downstream | 427162 | 9240716 ~ 9255445 (-) | True | LOC113531664 |
| XR_004577368.1 | other | downstream | 427432 | 9240716 ~ 9255175 (-) | False | LOC113531664 |
| TU455042 | other | downstream | 612357 | 9036866 ~ 9070250 (-) | False | ubash3ba |
| TU454979 | other | downstream | 673962 | 8919410 ~ 9008645 (-) | False | LOC113531288 |
| TU454858 | other | downstream | 842843 | 8837725 ~ 8839764 (-) | False | timm8b |
| XR_003403284.2 | other | upstream | 248 | 9682981 ~ 9683105 (-) | True | LOC113531682 |
| XR_003403281.1 | other | upstream | 1539 | 9684272 ~ 9684398 (-) | True | LOC113531679 |
| XR_003403283.1 | other | upstream | 1914 | 9684647 ~ 9684773 (-) | True | LOC113531681 |
| TU456221 | other | upstream | 923257 | 10605990 ~ 10606272 (-) | True | G384811 |
| TU456386 | other | upstream | 1395979 | 11078712 ~ 11083941 (-) | True | G384960 |
