RNA id: XR_004577382.1


Basic Information

Item Value
RNA id XR_004577382.1
length 2513
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC117596217
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9311773 ~ 9316605 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCCCCATCATCTGTCCCTCATCCATCTTAATCCTTTCATTCAGTAGAGCTAAAGTGAAGTCCATGGCTACCCAGGGGGAGGTGTGTAGGAGACCATGCTACTCTTGATGTCACTCTGAATCACCATTCTACTAGCaggcagataaaaaaaaaacacagagcaggAGACAAGAAAGCAGCACTGCAGACGAGCTGTTCAGCATCATCAGCCCTGCTCTGGAGACAGGACCTTCTTCTTCCTTAAGAGGCAGgacagaaacatgagtgtccaACAGGCTTCCTGAAACATGTTCAAGCAGCAGCCACTTGAACAGATCCGCAACACACCCAAGACTATGGAATAAAGAAGGACATTGCTGGCATCTCAGATGGCTGTTAGGATGCCCATTCCCATTGTATAATAAGAATAAAGCCGAAACCTGGACCTACGTCTCTTATCAGttgaaagtgtgaaaagaaTGTGCAAGAAAGTCCTCTCCAGGGAGATTCATATCCGTAAATATCTGCTTTTGACTTTTGTGCAGTGTAAAGCTGAACTGGAATGTTGTGTTGTGACCCTATGACCTCTGACCTGCCTTCTTCAGACACACCTGCATGAGGTGCCGCTGAGACACACGCAACAGCAGCTtccctctttctatctttctcacAGCCTTTTGTCCTGTGTGCCACATTATTGTCGTCATTCCCTTAGGCGAGGGTTTGCCAGGAAGCTAAACTAAACACATACCAATGGATTTTGTCTTCATGTTACACACACTAAGGAAGTCAGAAGATCATTCAGTGTCTACAGTGTGAGCTGCCATTTCTCTCCtcaaatataaacctgttagaGTGCTGGAAGTGTCAGAAGATAAGAGTCATTTGTGTGGATTAATCTGTCTGACAGTATGAGTGGATGGCTTATAGCTGTGAGACTGTAAATGTGACATTTATTTCAAAGCTAGTAGAAAATATGAGCTTAAGTAGTAGTAATTGGTTTCAtgcaaaaacataaaatacaaagagatgtgtgtgtgcctgtgaaAGTCGGGGCGCTGACAGCCAGTGTGTCTGTCACTAGCCTATAGGCATTTCTACAGCTGAAATTGTGGGTGTGGTTTGTTGGGATTAATCAGCATAATGCAAAAATGGGCTGTGCGATATGCACTCAGTTAATTGACATGTGCACCACGTCGGCTTCACAAGCTGGACCGAGAGCCATGGAAATGTCCGGCTTTCCAGAAGTCCCTCAGCAGGACTACCACAGACTGTCCGGTTTACACTACACCTCTTCTTTCTCTGATGCAGAGGACTGCTGTGACGAAACGACCAGTACAAGCTCTTCCTCAGATTACTTTGGCATGGACGATTGACAGAATATCTGTGTTTATTGCCTTTATTTAATCTAGGGAAAGTGCACTGAAGAGCATCATGATGTCTGGGCACCTGGTCTTAAATCCCCTTCTCTTTGTGCCATGACCAATATTTGAAGTTCTTGGTCCATGTCTcacacactatgcactataTTCTAAAACCCTTAGACTATGTACTTGGCTTTTAAGGACATGAATGTCTTAAATTGCACTAAAAGTAAATGCCATTACTGCCCAGTACCTCACTGGACAACACCAGAACAGCCCCCACAAGAATAACCCCCAGTTTTAAATTCTAAAATGGCTGctctaaattttttttgttaccatTTTGAATCTACGGAGTAGCAGCTGCCTCTGATGCCCCTTTCTGCTATATAGAGCAGGCTATGACCGGCAAGTGCAGAAAATGTCCAGCGTTACACACATCAGTTCTTGACTATATCTTAATAGTGCTGCACGTCTCCCAGCATGAACACACGCAATTTGAGAATtagttatagatttaattttgaGCCAGAATATCACAAAGATCGAAAAACTGCAAGATCAGCAAACAAGATATTATCAGCATCTTAaaatagaaaaggaaaagtTGCTATTACAATAACAATgctataataacaataataataataataataataatgataataaaaactTCATTTTCAGCTACATATAGTTTATTTAGGTtcctgttgtttattttatggttACTAAtgatattttgtgctttttttggttgtggtttttttttggttgaaatCAAGTAATGGACCCTAATGGTTTATCAGCTGACCGGCGAGTGAATCTACATGTGTTTAATGGTTTTCTAATGAGAGTTAAAGGTCCTACAGGGATCTGGCAGTCACTGCTGGAGACCCTGTGGTCAGAGAACTGGCAAAAATTCAATTAAGGTAAAACAATTCAGTTTACTAAACGGAGAATAGATCCTGGATCCATAACTGAATCAAGAATGACTCAACTCTTGGAAACCATTCAATCCATTAGATCCTGATGTGAATACCGTGATGTTTGATGGAAACCACAGATCAGTTCCCACTGGAGGGAAACAATATCTAAAATATgacatgttttgcatttttatgcTTCTGGAATAATTTTGaagatctttaataaatatttggcAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403273.2 lncRNA downstream 52957 9256495 ~ 9258816 (-) True LOC113531656
TU455285 lncRNA downstream 56337 9254201 ~ 9255436 (-) False LOC113531664
TU455264 lncRNA downstream 93575 9217990 ~ 9218198 (-) True G384027
TU455257 lncRNA downstream 102938 9208632 ~ 9208835 (-) True G384020
TU455252 lncRNA downstream 113781 9197783 ~ 9197992 (-) True G384015
XR_004577388.1 lncRNA upstream 108375 9424980 ~ 9426269 (-) True LOC117596221
TU455572 lncRNA upstream 463978 9780583 ~ 9786099 (-) True G384260
TU455583 lncRNA upstream 479321 9795926 ~ 9796654 (-) True G384271
TU455592 lncRNA upstream 496402 9813007 ~ 9813223 (-) True G384280
XR_004577442.1 lncRNA upstream 731367 10047972 ~ 10050220 (-) True LOC117596261
XM_026922513.2 mRNA downstream 3270 9301174 ~ 9308503 (-) True ptges
XM_026922289.2 mRNA downstream 19192 9289011 ~ 9292581 (-) True timm22
XM_026922533.2 mRNA downstream 56376 9240716 ~ 9255397 (-) False LOC113531664
XM_034300506.1 mRNA downstream 188294 9113444 ~ 9123479 (-) False si:ch211-215c18.3
XM_034300505.1 mRNA downstream 188296 9113444 ~ 9123477 (-) True si:ch211-215c18.3
XM_026922036.2 mRNA upstream 4052 9320657 ~ 9346311 (-) False usp20
XM_034300685.1 mRNA upstream 4052 9320657 ~ 9346311 (-) True usp20
XM_026922280.2 mRNA upstream 42056 9358661 ~ 9367586 (-) False med22
XM_026922281.2 mRNA upstream 42717 9359322 ~ 9367616 (-) False med22
XM_026922283.2 mRNA upstream 45643 9362248 ~ 9367586 (-) True med22
XR_004577369.1 other downstream 56328 9240716 ~ 9255445 (-) True LOC113531664
XR_004577368.1 other downstream 56598 9240716 ~ 9255175 (-) False LOC113531664
TU455042 other downstream 241523 9036866 ~ 9070250 (-) False ubash3ba
TU454979 other downstream 303128 8919410 ~ 9008645 (-) False LOC113531288
TU454858 other downstream 472009 8837725 ~ 8839764 (-) False timm8b
XR_003403282.1 other upstream 366002 9682607 ~ 9682733 (-) True LOC113531680
XR_003403284.2 other upstream 366376 9682981 ~ 9683105 (-) True LOC113531682
XR_003403281.1 other upstream 367667 9684272 ~ 9684398 (-) True LOC113531679
XR_003403283.1 other upstream 368042 9684647 ~ 9684773 (-) True LOC113531681
TU456221 other upstream 1289385 10605990 ~ 10606272 (-) True G384811

Expression Profile