RNA id: XM_026922280.2


Basic Information

Item Value
RNA id XM_026922280.2
length 1822
RNA type mRNA
GC content 0.41
exon number 5
gene id med22
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9358661 ~ 9367616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTGTGGGTAATTTTAAGCGGAGCGACGTTGGGAAGTGACGTCATTATCAAGCGACCGAAGAACGCGGAGTAGTTGTTTGGGAAATTGTTTACAGAATGCACtgaaagagtgagaaaacTGAGCAGTGCGAATAAAAATGGCCACACAACGGGTTCTCCCGCAGAGTAAAGAAACTCTTCTGCAGAACTACAACAAGAGACTGAAAGATGACATCAGATCCATACTGGACAACTTCACTGAGATCATCAAAACTGCCAAGGTAGAAGATGAAACGCAGGTGTCTAGAGCAACACAAGCGGAGCAGGACCACTACGAAATGCACGTCAGAGCTGCAAACATCgtgcGAGCTGGTGAGTCTCTGATGAAGCTGGTGTCAGACCTGAAGCAGTTCCTGATTCTGAACGATTTCCCGTCTGTAAACGAGGCCATTAGCCTGCGCAACCAGCAGCTGCGTGCCCTGCAGGAGGAATGCGACAAGAAGCTCATCTCCCTGCGTGATGAGATCGCCGTTGACCTGTACGAGCTCGAGGAAGAGTATTACTCCTCCAGCTGTGGACAATGGGACGGCGTCGAGTTGCCACTTTGCGAGGCGTTTCGTCAGCGAGACAGTTGGGGGTCACCCAATATGGCCCTTGACCCTTCAAACCCCATTACAGATGATTCGGAAAGGCCTATCGCTACAGAAACAATGTCACATCACCTCAATGGGCACGGAAGCAGCACAAATGAACAGTCTTGAAAACAGATCAGTTAGATCGCATAAGCTACTTTCTTAATCTTTGCTCTCTACATTAATtcctgagccaaaaaaaaaaaaaaactttcactgaCTTAAAAAACTTAAATGACATACACTCATCTACATCTTTGCAGTGGAACAAATACTGGATTCTCTTTTTCTATGTCTGACTACTGTACATTCCTCCCATACCTCGCagtattatagtgtgtgtgtttaccgtACATGACTTATCACTCTTGGGTCAGGAAGGCCCTGTTAGATAtctgtttacactgtttttttttttttctagttctTTCACATGATACTTTAGCACATAGAAGCTCATAGTCATTTGTGTAATTTTCATTGTGTTACCGTTTGAAGGCACATTTCCTTAGTTGCATCCACTACGAATAAAATGGTTTGACACAATAAGTTTCTGAAGTCTTATTTACTTGGAAACATGATGTAGATATATTAAGTATTCATTGCACTGCAAAGCTATTGTATAAAAACAGGCACAAATTGTTCaactaaatatttacataatagcATTTAAAGATGCAGTATGAAGCATTAACTAAGAAATCCTGGAACTCATGAAGAGAGACATCATGttcactttcattcattcattatcctTTATCCtaatcagggtcatggtggatccagaggaATCCCACGAACTCTGGACGTGAGCCAatttagcatgtttttgggacatgggaggaaaccagagaacccggaaacagggagaacatgcccaactccacacagacagtaacccaagtctggagctgtgaggcagcaatgcaaCTCTCTGCGCCACCATGCCACTCGTGTTATCCCACTACAAACAAAATCTTCCTTTGAATTTttgacaaatatttattttcttgcttCAAATAATTTTGGTTGACTGCTTTTAATGAAGTCGTACACAATGCAACATTAACATGAATTAATTCACATTCATCAAcataaaataattcagcaagTATCCCTTGTGATTTGCTGattacacattatatttacagGTAAAATCTTTTTAGCTGTATTTATCTGtacaaatgtaattattttcagTATGACTTCT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577382.1 lncRNA downstream 42056 9311773 ~ 9316605 (-) False LOC117596217
XR_004577383.1 lncRNA downstream 42056 9311773 ~ 9316605 (-) True LOC117596217
XR_003403273.2 lncRNA downstream 99845 9256495 ~ 9258816 (-) True LOC113531656
TU455285 lncRNA downstream 103225 9254201 ~ 9255436 (-) False LOC113531664
TU455264 lncRNA downstream 140463 9217990 ~ 9218198 (-) True G384027
XR_004577388.1 lncRNA upstream 57394 9424980 ~ 9426269 (-) True LOC117596221
TU455572 lncRNA upstream 412997 9780583 ~ 9786099 (-) True G384260
TU455583 lncRNA upstream 428340 9795926 ~ 9796654 (-) True G384271
TU455592 lncRNA upstream 445421 9813007 ~ 9813223 (-) True G384280
XR_004577442.1 lncRNA upstream 680386 10047972 ~ 10050220 (-) True LOC117596261
XM_026922036.2 mRNA downstream 12350 9320657 ~ 9346311 (-) False usp20
XM_034300685.1 mRNA downstream 12350 9320657 ~ 9346311 (-) True usp20
XM_026922513.2 mRNA downstream 50158 9301174 ~ 9308503 (-) True ptges
XM_026922289.2 mRNA downstream 66080 9289011 ~ 9292581 (-) True timm22
XM_026922533.2 mRNA downstream 103264 9240716 ~ 9255397 (-) False LOC113531664
XM_026922285.2 mRNA upstream 5905 9373491 ~ 9380542 (-) True LOC113531509
XM_026922216.2 mRNA upstream 158100 9525686 ~ 9540356 (-) True LOC113531455
XM_026922136.2 mRNA upstream 256729 9624315 ~ 9637720 (-) False lmo4a
XM_026922135.2 mRNA upstream 256729 9624315 ~ 9636202 (-) False lmo4a
XM_026922137.2 mRNA upstream 256729 9624315 ~ 9634344 (-) True lmo4a
XR_004577369.1 other downstream 103216 9240716 ~ 9255445 (-) True LOC113531664
XR_004577368.1 other downstream 103486 9240716 ~ 9255175 (-) False LOC113531664
TU455042 other downstream 288411 9036866 ~ 9070250 (-) False ubash3ba
TU454979 other downstream 350016 8919410 ~ 9008645 (-) False LOC113531288
TU454858 other downstream 518897 8837725 ~ 8839764 (-) False timm8b
XR_003403282.1 other upstream 315021 9682607 ~ 9682733 (-) True LOC113531680
XR_003403284.2 other upstream 315395 9682981 ~ 9683105 (-) True LOC113531682
XR_003403281.1 other upstream 316686 9684272 ~ 9684398 (-) True LOC113531679
XR_003403283.1 other upstream 317061 9684647 ~ 9684773 (-) True LOC113531681
TU456221 other upstream 1238404 10605990 ~ 10606272 (-) True G384811

Expression Profile