Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026922281.2 |
| length | 1187 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 5 |
| gene id | med22 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 9358661 ~ 9367616 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0016592 | mediator complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577382.1 | lncRNA | downstream | 42717 | 9311773 ~ 9316605 (-) | False | LOC117596217 |
| XR_004577383.1 | lncRNA | downstream | 42717 | 9311773 ~ 9316605 (-) | True | LOC117596217 |
| XR_003403273.2 | lncRNA | downstream | 100506 | 9256495 ~ 9258816 (-) | True | LOC113531656 |
| TU455285 | lncRNA | downstream | 103886 | 9254201 ~ 9255436 (-) | False | LOC113531664 |
| TU455264 | lncRNA | downstream | 141124 | 9217990 ~ 9218198 (-) | True | G384027 |
| XR_004577388.1 | lncRNA | upstream | 57364 | 9424980 ~ 9426269 (-) | True | LOC117596221 |
| TU455572 | lncRNA | upstream | 412967 | 9780583 ~ 9786099 (-) | True | G384260 |
| TU455583 | lncRNA | upstream | 428310 | 9795926 ~ 9796654 (-) | True | G384271 |
| TU455592 | lncRNA | upstream | 445391 | 9813007 ~ 9813223 (-) | True | G384280 |
| XR_004577442.1 | lncRNA | upstream | 680356 | 10047972 ~ 10050220 (-) | True | LOC117596261 |
| XM_026922036.2 | mRNA | downstream | 13011 | 9320657 ~ 9346311 (-) | False | usp20 |
| XM_034300685.1 | mRNA | downstream | 13011 | 9320657 ~ 9346311 (-) | True | usp20 |
| XM_026922513.2 | mRNA | downstream | 50819 | 9301174 ~ 9308503 (-) | True | ptges |
| XM_026922289.2 | mRNA | downstream | 66741 | 9289011 ~ 9292581 (-) | True | timm22 |
| XM_026922533.2 | mRNA | downstream | 103925 | 9240716 ~ 9255397 (-) | False | LOC113531664 |
| XM_026922285.2 | mRNA | upstream | 5875 | 9373491 ~ 9380542 (-) | True | LOC113531509 |
| XM_026922216.2 | mRNA | upstream | 158070 | 9525686 ~ 9540356 (-) | True | LOC113531455 |
| XM_026922136.2 | mRNA | upstream | 256699 | 9624315 ~ 9637720 (-) | False | lmo4a |
| XM_026922135.2 | mRNA | upstream | 256699 | 9624315 ~ 9636202 (-) | False | lmo4a |
| XM_026922137.2 | mRNA | upstream | 256699 | 9624315 ~ 9634344 (-) | True | lmo4a |
| XR_004577369.1 | other | downstream | 103877 | 9240716 ~ 9255445 (-) | True | LOC113531664 |
| XR_004577368.1 | other | downstream | 104147 | 9240716 ~ 9255175 (-) | False | LOC113531664 |
| TU455042 | other | downstream | 289072 | 9036866 ~ 9070250 (-) | False | ubash3ba |
| TU454979 | other | downstream | 350677 | 8919410 ~ 9008645 (-) | False | LOC113531288 |
| TU454858 | other | downstream | 519558 | 8837725 ~ 8839764 (-) | False | timm8b |
| XR_003403282.1 | other | upstream | 314991 | 9682607 ~ 9682733 (-) | True | LOC113531680 |
| XR_003403284.2 | other | upstream | 315365 | 9682981 ~ 9683105 (-) | True | LOC113531682 |
| XR_003403281.1 | other | upstream | 316656 | 9684272 ~ 9684398 (-) | True | LOC113531679 |
| XR_003403283.1 | other | upstream | 317031 | 9684647 ~ 9684773 (-) | True | LOC113531681 |
| TU456221 | other | upstream | 1238374 | 10605990 ~ 10606272 (-) | True | G384811 |
