ccn1l1 (LOC108259730)


Basic Information

Item Value
gene id ccn1l1
gene name LOC108259730
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9648202 ~ 9653144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922274.2
tgtgtgagtgatataTCAGAGGGGGCTGTCTGCTGTTCGCTATAAAAGCCGTAGCCACTGAGGGAATCTCTTCAAGGAGAACTGAGCTACCCGCTGCTGCTGgcatttcacacactcacactcaaccacacacatacatacatagatacacacacagcaggagtCAGACGTTGGATTGCAGGCAAAACAGCAAAAGAACAGAACTGAAAGGAAGAGGACAAAGCTGATGGAGAACTGAAGGACAAgctaaattttcttttttgaaatttGATCTAATCATCCGTTCCTTTGGGCTTTGAGCAGAATAACTCCAGCGCTCTCACACAAAACTTCACTTCTGAGTGATATGTTGTCTTTGAGAATGATTTTAAGGCGAGCCAACCTTCTCACACTGGTGCTCATGTGCTGGTGTGCTGTAAAGATCCAGGGTGAGTGTCCACGTAAGTGCTCATGCCCCTCATCTCCACCTTCGTGCCTGCCTGGTATCAGCTCTGTGCTGGACTCCTGCGGCTGCTGCAGAGTATGTGCCAGGCAGTTTAATCAGGACTGCAGTACCACTGAGCCCTGTGACCACATCAAGGGGCTGCGCTGCCATCTAGGGGCCAAAGGAGACCCACAGAGAGGCTTGTGCCGAGCCGAGGCTCAAGGTCGGCCGTGTGAGCTGGATGGCCGAGTCTACCAGCACGGTGAAGACTTTCAGCCTAGCTGTGAGCATCGCTGCACCTGCATGGATGGAGTGGTGGGCTGCATGCCTCTCTGCCCACACCATGTGTCTCTCCCTGACTGGCGCTGTGCCCGGCCTCGCCTCACCACACTGCCTGGACGCTGCTGCCAAGAGTGGGTGTGCGATGATGACAACCACATTGCTGAAGATGACACGATACTTGACAGCACTTCTCATGAACATGAGAAACATAACGACCTCATTAGTAATGAGCTATTAGTAATGGCACCAACACCATGGGACAGCAGTGCAGGAGCACCACATAATGAGTGGATTTCCTCCACGCAATCCCAAGTGCCCGTCCCACCTACATGCTTCCTGCAAACCACTGATTGGTCACCTTGCTCAGCAACCTGTGGAATGGGCGTGTCCAGCAGGGTAACCAATAGCAACGCAGAGTGCCGGCTCGTCAAGGAGACGCGTCTGTGTCAGATTCGAGAGTGTGGCAGTAGTCTATTGGCATCACCACTCAAGAAAGGGAAGAAGTGTCAGAGAACCATAAGGCCACGTGAGCCAGCTCCCCTCACATTTGCTGGATGCACCACTGCGCGCCGCTACCGGCTGCGTTCTTGCGGCTCGTGCGTTGATGGCCGCTGTTGTGAGCCCACGCTCACCCGCACTGTGCGCATGCGCTTCCACTGCCCACAAGGACAAGAATTCAGCCGCAACGTCATGTGGATCATTCAGTGCAGCTGCACTCAGAGCTGCAGCACCCAATCATCAACGCAGCACCCAAAATACATCAGCCTGCCCAatgatatacacacattcaaatactagacccacccacacacacacacacatccacgcACAGCATGTTTCCATTACATCCACTACATCAAGCAAAATAGGCTGCATTTTCATCAGCTATGCAAAAGACCCAAACTTAAAAACTACaggtatttttttaagtaaataatataataatatacaaattcTAATTTCTACGAATTTGTAAAGTTTCAGCTAATGAAATCTTGCATATATCTCAGTTacataatttgtttaattttatattttgtctttGGATTATATAGCTGGCACATTTTTGTCATGATATTACTGATAATGTTTGATAAATACTGATCACagatattaataattttttgatATTAGCCATTTACATCAAGTTTGAGAAATGATTTTGGTGGATGGAAACATATAGCTACTGCCTTTCAGACTGCTCTACTGTCCAAATAcctatgtaaacacacacacac

Function

NR:

description
protein CYR61-like

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922274.2 True 1944 mRNA 0.48 5 9648202 9653144

Neighbor

gene id symbol gene type direction distance location
lmo4a lmo4a,LOC108260376,LOC103024382,LOC108427513,LOC107740929,LOC107691029,LOC107587399 coding downstream 10482 9624315 ~ 9637720 (-)
LOC113531455 LOC108259755 coding downstream 107846 9525686 ~ 9540356 (-)
LOC113531509 surf1,LOC107725413 coding downstream 267660 9373491 ~ 9380542 (-)
med22 med22,LOC107726295,LOC107596962,LOC107693846,LOC107587409,LOC107710756,LOC107691021 coding downstream 280586 9358661 ~ 9367616 (-)
usp20 usp20 coding downstream 301891 9320657 ~ 9346311 (-)
rpl12 rpl12,LOC107597107 coding upstream 29132 9682276 ~ 9687690 (-)
LOC113531680 NA coding upstream 29463 9682607 ~ 9682733 (-)
LOC113531682 NA coding upstream 29837 9682981 ~ 9683105 (-)
LOC113531679 NA coding upstream 31128 9684272 ~ 9684398 (-)
LOC113531681 NA coding upstream 31503 9684647 ~ 9684773 (-)
LOC117596221 NA non-coding downstream 221933 9424980 ~ 9426269 (-)
LOC117596217 NA non-coding downstream 331597 9311773 ~ 9316605 (-)
LOC113531656 LOC106579430,LOC107088658 non-coding downstream 389386 9256495 ~ 9258816 (-)
G384027 NA non-coding downstream 430004 9217990 ~ 9218198 (-)
G384020 NA non-coding downstream 439367 9208632 ~ 9208835 (-)
G384260 NA non-coding upstream 127439 9780583 ~ 9786099 (-)
G384271 NA non-coding upstream 142782 9795926 ~ 9796654 (-)
G384280 NA non-coding upstream 159863 9813007 ~ 9813223 (-)
LOC117596261 NA non-coding upstream 394828 10047972 ~ 10050220 (-)
LOC113531315 NA non-coding upstream 515970 10169114 ~ 10171595 (-)
LOC113531664 NA other downstream 392757 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 564118 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 577943 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 639516 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 808438 8837678 ~ 8839764 (-)
G384811 NA other upstream 952846 10605990 ~ 10606272 (-)
G384960 NA other upstream 1425568 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 1893165 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 2038090 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 3154057 12807201 ~ 12891295 (-)

Expression


Co-expression Network