G384927 (LOC107667909,LOC107674520,LOC105024386)


Basic Information

Item Value
gene id G384927
gene name LOC107667909,LOC107674520,LOC105024386
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10785595 ~ 10819760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456349
CCTTGGGCATCATCTATAAATTGGCTGACACAGGTGCATAAACTGATGTGTCCATTACCAAGTTTTCAGGAGTGAGTCAGAAGTATAAAGAAGGgaaaacaaatatacagtatatacagtatatctcagGCATGGGACTGAGATCCAACATATAATGCAACCCTCatggatttattcataattttagGCCAGGTTAGAACCAGTTTTACATAGGTATGCAGACAGCTCAGAACAATAATGACACTTGAAGCACTATTTATATTTTCGTAGCCTAACACAAAAAAAGAGGTCATTCACCATGGATTGGATTAAACTAGCATTTTCCAGAGAATTACAGAATGATGCATCATTCATGAGGAAAATATAAACTATGGTGGTGTGTCAGGTGCTACAGTTTAGTCTGTGAAGCTTctgtgaaattgtaatgttgtCTTTGCTCCAAATGATGGAGCACCCCCAACAAGATAAAAAGAAATTGCATACTTGTAAATATACATAGTTTTTCCAGCATACTGACATTGTGTTCTATAGCCACTTACTAAACTTTTTTGCAAATGTGTACAAAAAATCTGCCCCCTGTGTGCAGCCAATGCTGCCATatacacttaaaaataaaaatcaaacattaaataacaattgtgtgatccttaccaacttctataaacaaacacataaccaaaaaaaaaaaaaaaaaacaaggcgtACATTAACCAAAAATACTAATGACAGATTTTAACCAGCTTGTGAGAAAATTTAGACTGACATATCTTCAATCTTACCTTCAAGCAAGCGCTGTATGATGCTGTCTATGTTGAGCTTATCGATGTCGGCCATGccttgctaactagctaaataagATTATTTCCTGTAATTTTTTACACTTCACCTAAACACCAGATAACTCCTAGGACTACAAGTAACGAATTACAAGAACATTTGGATAGGTTCTTTAGTGGATTTATCCTTGCCTTCTCCCTTATTGCTGCTTTTACGTCTGATAAATCTGCTCGTGCCTATGAACACATAACACCGG
>TU456350
AGTTCCTTCCGTCAATCAGCATACTGATACACAAATGAGTATTAGATCGAGCATACTCACACTCATCGTAGAAACCATAAATGCGATTGATTGAGGCGCATTCATGGTTACCCCTGAGCAGGAAGAAGTTTTCTGGGTATTTGATTTTGTAGGCCAGCAGAAGGCAGATGGTCTCGAGTGATTGTTTGCCCCGATCCACATAGTCCCCAAGGAACAGGTAGTTACTTTCAGGAGGATAGCCGCCATATTCGAAGAGCCTCAGCAGATCATAGTACTGCCCATGGATGTCACCTACAAAGAGAAGATCAGGCCCACTTGGACAACTGCTGAACACGACCAGAATTTCTGGCTTTAGATGTCATATAGCCGTACTGTGTCTTAAGTTTGACAACTGTGGGGGTTTTACTCACCACAGATCTTTAGTGGGGCCTCCAGCTCTAGCAGGATAGGCTGGCTGAGAAAGATCTCACGAGATTTCAGACAAAGACCACGAATCTCATTCTCCTGCAGCTGAACATTCTTACCAGGCTTGGACCCTCTCTTCAAGCAAGCGCTGTATGATGCTGTCTATGTTGAGCTTATCGATGTCGGCCATGccttgctaactagctaaataagATTATTTCCTGTAATTTTTTACACTTCACCTAAACACCAGATAACTCCTAGGACTACAAGTAACGAATTACAAGAACATTTGGATAGGTTCTTTAGTGGATTTATCCTTGCCTTCTCCCTTATTGCTGCTTTTACGTCTGATAAATCTGCTCGTGCCTATGAACACATAACACCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456349 True 1033 lncRNA 0.36 2 10785595 10819760
TU456350 False 794 lncRNA 0.44 2 10785595 10798518

Neighbor

gene id symbol gene type direction distance location
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 2605 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 118473 10558236 ~ 10667122 (-)
ungb LOC108280186 coding downstream 273885 10507836 ~ 10511710 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding downstream 306871 10460316 ~ 10478724 (-)
scai scai,LOC107740943 coding downstream 325797 10387883 ~ 10459798 (-)
mcc mcc,LOC106565572 coding upstream 14697 10834457 ~ 10981914 (-)
LOC113523726 NA coding upstream 327371 11147131 ~ 11151024 (-)
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding upstream 535914 11355674 ~ 11452919 (-)
foxd1 foxd1 coding upstream 1170317 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 1191449 12011209 ~ 12019955 (-)
G384925 NA non-coding downstream 285 10784992 ~ 10785310 (-)
G384922 NA non-coding downstream 11879 10773448 ~ 10773716 (-)
G384917 NA non-coding downstream 47296 10737895 ~ 10738299 (-)
G384850 NA non-coding downstream 101991 10683395 ~ 10683604 (-)
G384849 NA non-coding downstream 103172 10682220 ~ 10682423 (-)
G384928 NA non-coding upstream 1877 10821637 ~ 10825954 (-)
LOC113531553 NA non-coding upstream 94379 10914139 ~ 10917263 (-)
G384962 NA non-coding upstream 242780 11062540 ~ 11073165 (-)
LOC117596259 NA non-coding upstream 282067 11101827 ~ 11102812 (-)
G385060 NA non-coding upstream 399301 11219061 ~ 11219490 (-)
G384811 NA other downstream 179323 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 1530150 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1701511 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1715336 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1776909 8919410 ~ 9008686 (-)
G384960 NA other upstream 258952 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 726549 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 871474 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1987441 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2796362 13616122 ~ 13680525 (-)

Expression


Co-expression Network