G384850


Basic Information

Item Value
gene id G384850
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10683395 ~ 10683604 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456260
ATCacattttatgccattttgtGTTGTTGGCTCtagtcttatttgactgatcgttattagtttgtaaacgtaaatggtgacttctcttctcatactaaggtaaagtttggtgtcccacaaggctctgttttaggcccactgctcttttctttatatatgctacctctgggcaaaattattcataaacatgatattagcttccactgttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456260 True 210 lncRNA 0.36 1 10683395 10683604

Neighbor

gene id symbol gene type direction distance location
ssh1b NA coding downstream 16273 10558236 ~ 10667122 (-)
ungb LOC108280186 coding downstream 171685 10507836 ~ 10511710 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding downstream 204671 10460316 ~ 10478724 (-)
scai scai,LOC107740943 coding downstream 223597 10387883 ~ 10459798 (-)
zmat5 zmat5 coding downstream 326297 10349022 ~ 10357098 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding upstream 7640 10691244 ~ 10782990 (-)
mcc mcc,LOC106565572 coding upstream 150853 10834457 ~ 10981914 (-)
LOC113523726 NA coding upstream 463527 11147131 ~ 11151024 (-)
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding upstream 672070 11355674 ~ 11452919 (-)
foxd1 foxd1 coding upstream 1306473 11990077 ~ 11991776 (-)
G384849 NA non-coding downstream 972 10682220 ~ 10682423 (-)
G384806 NA non-coding downstream 85012 10598127 ~ 10598383 (-)
G384804 NA non-coding downstream 88330 10594841 ~ 10595065 (-)
G384799 NA non-coding downstream 95816 10587348 ~ 10587579 (-)
LOC113531332 NA non-coding downstream 99360 10581287 ~ 10584035 (-)
G384917 NA non-coding upstream 54291 10737895 ~ 10738299 (-)
G384922 NA non-coding upstream 89844 10773448 ~ 10773716 (-)
G384925 NA non-coding upstream 101388 10784992 ~ 10785310 (-)
G384927 LOC107667909,LOC107674520,LOC105024386 non-coding upstream 101991 10785595 ~ 10819760 (-)
G384928 NA non-coding upstream 138033 10821637 ~ 10825954 (-)
G384811 NA other downstream 77123 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 1427950 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1599311 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1613136 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1674709 8919410 ~ 9008686 (-)
G384960 NA other upstream 395108 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 862705 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1007630 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2123597 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2932518 13616122 ~ 13680525 (-)

Expression


Co-expression Network