G384917


Basic Information

Item Value
gene id G384917
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10737895 ~ 10738299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456337
AAAAGAATTATCAGAAGAGTTGTCCAAGAGCCAAGGACCACTTGTGGAGAGCTTCAGAAACACCTGGAATTAACAGGTACAATTGttgaccaaaattgaactctTTGGATGCCATAATACACACCATGTTTGGAGGACAAATGGCACTGCACATCACCCCAAAAACACCATACTAACAGTGAAGTTTGGAGGTGGGAACATCATGgtgtggggctgtttttcagcaTACGGTACTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456337 True 238 lncRNA 0.44 2 10737895 10738299

Neighbor

gene id symbol gene type direction distance location
ssh1b NA coding downstream 70773 10558236 ~ 10667122 (-)
ungb LOC108280186 coding downstream 226185 10507836 ~ 10511710 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding downstream 259171 10460316 ~ 10478724 (-)
scai scai,LOC107740943 coding downstream 278097 10387883 ~ 10459798 (-)
zmat5 zmat5 coding downstream 380797 10349022 ~ 10357098 (-)
mcc mcc,LOC106565572 coding upstream 96158 10834457 ~ 10981914 (-)
LOC113523726 NA coding upstream 408832 11147131 ~ 11151024 (-)
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding upstream 617375 11355674 ~ 11452919 (-)
foxd1 foxd1 coding upstream 1251778 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 1272910 12011209 ~ 12019955 (-)
G384850 NA non-coding downstream 54291 10683395 ~ 10683604 (-)
G384849 NA non-coding downstream 55472 10682220 ~ 10682423 (-)
G384806 NA non-coding downstream 139512 10598127 ~ 10598383 (-)
G384804 NA non-coding downstream 142830 10594841 ~ 10595065 (-)
G384799 NA non-coding downstream 150316 10587348 ~ 10587579 (-)
G384922 NA non-coding upstream 35149 10773448 ~ 10773716 (-)
G384925 NA non-coding upstream 46693 10784992 ~ 10785310 (-)
G384927 LOC107667909,LOC107674520,LOC105024386 non-coding upstream 47296 10785595 ~ 10819760 (-)
G384928 NA non-coding upstream 83338 10821637 ~ 10825954 (-)
LOC113531553 NA non-coding upstream 175840 10914139 ~ 10917263 (-)
G384811 NA other downstream 131623 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 1482450 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1653811 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1667636 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1729209 8919410 ~ 9008686 (-)
G384960 NA other upstream 340413 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 808010 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 952935 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2068902 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2877823 13616122 ~ 13680525 (-)

Expression


Co-expression Network