G384804


Basic Information

Item Value
gene id G384804
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10594841 ~ 10595065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456214
GTGGGATATGAAGAGGGCAATGAGGAAGAAagttggaaaaaaagaagaaaataaagatggaGAAAAGTATTAAGGAAAAGCTTGTCATAGTGTTTGGATTTTATAGGGAAATAAGCCCCATAATACTCACTCACGACTATTACACTACTCTCCATTGAAAGCCACCTAGCTGAGAAGTTGGACTTCAAAAATCTAATCAGTGACTTTGCCAACATGAACACTCGc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456214 True 225 lncRNA 0.38 1 10594841 10595065

Neighbor

gene id symbol gene type direction distance location
ungb LOC108280186 coding downstream 83131 10507836 ~ 10511710 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding downstream 116117 10460316 ~ 10478724 (-)
scai scai,LOC107740943 coding downstream 135043 10387883 ~ 10459798 (-)
zmat5 zmat5 coding downstream 237743 10349022 ~ 10357098 (-)
m17 LOC108271423 coding downstream 328095 10263922 ~ 10266746 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding upstream 96179 10691244 ~ 10782990 (-)
mcc mcc,LOC106565572 coding upstream 239392 10834457 ~ 10981914 (-)
LOC113523726 NA coding upstream 552066 11147131 ~ 11151024 (-)
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding upstream 760609 11355674 ~ 11452919 (-)
foxd1 foxd1 coding upstream 1395012 11990077 ~ 11991776 (-)
G384799 NA non-coding downstream 7262 10587348 ~ 10587579 (-)
LOC113531332 NA non-coding downstream 10806 10581287 ~ 10584035 (-)
G384792 NA non-coding downstream 17609 10577016 ~ 10577232 (-)
G384784 NA non-coding downstream 28822 10565812 ~ 10566019 (-)
G384782 NA non-coding downstream 31461 10563044 ~ 10563380 (-)
G384806 NA non-coding upstream 3062 10598127 ~ 10598383 (-)
G384849 NA non-coding upstream 87155 10682220 ~ 10682423 (-)
G384850 NA non-coding upstream 88330 10683395 ~ 10683604 (-)
G384917 NA non-coding upstream 142830 10737895 ~ 10738299 (-)
G384922 NA non-coding upstream 178383 10773448 ~ 10773716 (-)
LOC113531664 NA other downstream 1339396 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1510757 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1524582 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1586155 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 1755077 8837678 ~ 8839764 (-)
G384811 NA other upstream 10925 10605990 ~ 10606272 (-)
G384960 NA other upstream 483647 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 951244 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1096169 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2212136 12807201 ~ 12891295 (-)

Expression


Co-expression Network