G384792


Basic Information

Item Value
gene id G384792
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10577016 ~ 10577232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456202
GTTAAATGTTTCAGACCAAAGTTCAGtcatccctgggagttaatttgtgcctctttcctgaatgatgcagtgaATGTGGGGTCCcatgatttatatatttgcatacaattgtttgtaTAGATGCTTGTGGGAACTTCAGTTGATTGGAAATTGCTCTTTGACTTATGTTGGTCCACAGTTGTTTTTCTGAGGTCTTGACCAATTGCTTGTATTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456202 True 217 lncRNA 0.38 1 10577016 10577232

Neighbor

gene id symbol gene type direction distance location
ungb LOC108280186 coding downstream 65306 10507836 ~ 10511710 (-)
ppp6c ppp6c,Ppp6c,LOC107587376,LOC107681855,LOC100380848,LOC107093923,LOC106570422,LOC102313764,LOC100701794,LOC102783418 coding downstream 98292 10460316 ~ 10478724 (-)
scai scai,LOC107740943 coding downstream 117218 10387883 ~ 10459798 (-)
zmat5 zmat5 coding downstream 219918 10349022 ~ 10357098 (-)
m17 LOC108271423 coding downstream 310270 10263922 ~ 10266746 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding upstream 114012 10691244 ~ 10782990 (-)
mcc mcc,LOC106565572 coding upstream 257225 10834457 ~ 10981914 (-)
LOC113523726 NA coding upstream 569899 11147131 ~ 11151024 (-)
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding upstream 778442 11355674 ~ 11452919 (-)
foxd1 foxd1 coding upstream 1412845 11990077 ~ 11991776 (-)
G384784 NA non-coding downstream 10997 10565812 ~ 10566019 (-)
G384782 NA non-coding downstream 13636 10563044 ~ 10563380 (-)
G384671 NA non-coding downstream 37807 10538998 ~ 10539209 (-)
G384668 NA non-coding downstream 39353 10537207 ~ 10537663 (-)
G384666 NA non-coding downstream 53551 10523236 ~ 10523465 (-)
LOC113531332 NA non-coding upstream 4055 10581287 ~ 10584035 (-)
G384799 NA non-coding upstream 10116 10587348 ~ 10587579 (-)
G384804 NA non-coding upstream 17609 10594841 ~ 10595065 (-)
G384806 NA non-coding upstream 20895 10598127 ~ 10598383 (-)
G384849 NA non-coding upstream 104988 10682220 ~ 10682423 (-)
LOC113531664 NA other downstream 1321571 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 1492932 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 1506757 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 1568330 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 1737252 8837678 ~ 8839764 (-)
G384811 NA other upstream 28758 10605990 ~ 10606272 (-)
G384960 NA other upstream 501480 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 969077 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 1114002 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 2229969 12807201 ~ 12891295 (-)

Expression


Co-expression Network