RNA id: XM_034300588.1


Basic Information

Item Value
RNA id XM_034300588.1
length 6315
RNA type mRNA
GC content 0.41
exon number 8
gene id map1b
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11546309 ~ 11627686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGTGGACATGAGCGTCTAAAAAGAATGGCGACGCTCACTGCATCTGCAGAAACCGCCGAATCATTCTGCAGCGACGGCAGCACCAGAGGCGGTATCATGGCATCGCCCACAGACTTTGCATATTACTTCGACGACGGCAAATTTTATCTGCTCGTAGCCGTTGGAGAGTTAGTCACCACCGAGCATCTTAAATGTGCTATTTCAGACATAGAAAAAGgAATTCGTTCATGGGACACAAATCTCATTAACTGCAACTTGGACCAGGAGCTGAAGCTGTTTGTTTCTCGACACTCAGTTAGGTTCTCTTCTGATGTGCAAGGACAGAAAGTTTTGCACTACAAAAGCAGCATACTGGAGACAGTAGTTCTGATCAACCCCTCAGATGAAGCTCTTAGCACTGAGGTTCGCTTGTTGATATCGGATACAGCCCGCCACAAGCTACTTGTTCTGGCTGGacaatgttttgaaaatacAGGCGAGCTAATTCTTCAGTCGGgttccttctcttttttcaaCTTCATTGACATTTTCACAGACCAAGAGatTGGCGAACTTTTAAGCACCATACATCCAGCCAACAAAGCAAGACTAACTGTTTCCTGTACTAAACATGGGGACTGGAAAAATTCCAACCTTGATAAACACAGCCTACAGgactttattaatattaatctaaaCTCTGTAATTATACTTCCAGAAATGGAGGGCCTCTCAGAGTTCACAGAATACCTCTCAGAATCAGTGGAAATTCCATCTCCTTTTGACATGCTTGAACCCCCCAGCTCTGGTGGGTTCCTAAAGTTATCTAAGCCCTGCTGTTACATTTTTCCTGGAGGCCGAGGTGATTCAGCACTTTTTGCTGTTAATGGTTTCAACATGCTTGTAAACGGTGGATCTGACAGGAAATCATGTTTTTGGAAGTTGGTGCGCCATTTGGACAGGATAGATTCCATCCTTTTGACACACATTGGAGATGACAGTCTTCCAGGAATCAACAGCATGCTGTGGCGAAAGACTGCTGAACTGGAAGTGGAGCAGTCACAAGGATCCACAGCCAATAGTGAGTGGATGAAGAACATGATCTCCCCTGACCTTGGTGTTGTATTCTTAAACCTGCCTCAGACTCTTCAGAATCCAGAACCAAATTACAGGGTACGAAGAAATATTGAAGAAGCAGCACTCACTCTACAATATCTCAGTAAGCTCTCTTTGAAACCAAAGCCGCTGCAAAGGAATTTAGGGAATACAATTGAACCTATTATACTATTCCAAAAAATGGGTGTTGGAAAGTTGGAAATGTATGTTCTCAATCCAGGAAAAAACAGCAAGGAGCTGCAGTATTTTATGAAGCAATGGACTGGCACTGAGAAGGACAAGGCTTCCATTCTATTACCAAATGGAAATGAATCAGAGCTTCCAATCTCATATTTGTCCTCAATCTCTTCACTGATTGTATGGCATCCTTCAAATCAATCTGAGAAAATAGTACGTGTTCTGTTTCCAGGCAATGCCACACAGTATAGCATACTTGAAGGCCTAGAGAAATTAAAACACTTGGATTTCCTCAAGTATCCCATTGTCACAGAAAAGGAGCTGTCATCAAACATGGCACCAGCACTCAAGCAAGCAAAAATGAAGCTTAAAATAGAGAGCAAGGGCAGTGTAAAATCACTGTCAAAAGCATCACCAATCAAAGGCATCGAGAAGTCATCCAAAGATGATGTTTCAGAAAAGGCAAAAAATTATTCTGATGGAACTCTGGAGGCATCACtgaaaacagagaagaaaataaaaactcttgccaaacatgcaaaaattatggaaaaagaaacaaaaactgaacaaaCATCATTAATTGACTctccagaaaaaaagaaagccagtataaaaccaaaaattatccccaaaacaaacaagaagaCAGTAGTAGTGAAAAAGAATGAGGCTGATAAAAAGGAGGAAagcactgagaaaagaaaaagtcacaATTTCATAGCCCAAAGGGATGAAAAGGCCACAAAtgagaaattaaagaaagaggaagttaggaaacaaggcaaaaaaaaggagATTAGGAAAGGTTCCCCCTTGAaggagagcagaaaagcagaaaagaaagaacTTTCGAAGGATGATAAAGATGTTAAAACAGACTCCAAGAAACCTGCAAACTTAGACAATAATTCTCACATAAGTGATGTGAAAAAGTCTGCCCCAAAACTGAAGGCACCAATACAAGCACCAAGCAGCCCTgcaaaatctaaacaaaaaagtatgagcaagtcttctaaaaaaaatgctgaaaaacccATGGCAATTGCTGCTTTTGCAACTGTTTCTGTGAAGACAGCCTCTGTTGCCAGCACCATAAATAAACAGGCTATGAAGGCTGAAAGATCCATAATGTCCTCTCCAGAAGACCTGACTAAAGACTTTGAAACTCTTAAAGCAGAAAACATAGGTAAATATGATGAAAGTCTATCTCAGAGCAAAACTGAGAGTTCTGAACAAGGATTAATAATTCAGCACGTAGAAATCATTTGCAAGGAATTAGCAGAATCTCTTGATGAGAGTATTACAACTGTAGAAGCTGATGAAGAATATGTGGAGGTAGaacctaagaaaaaaacaaatattcaaCAAATCCATAGTGAAAAATTTGAAGATGATGGCACAGGTCTTGAAGAATCATCTGATGTAGGAGATTATGAAGAAAAGAGACATACAGAAAATGTAGACGAACAGGAACGACATATGAATACTCAGTTTAAAGCAGAAGAAATATTAATGGAGTATTATAAAAGAGAAACTTGGGAAACAGAAtacaaaaaacatgacaaagaaagTGAAATGCAGAATCTAGTAGTGCACAGTCCCATACAGCCTTCTGGTTCTGTTTCACCAGCAGTTTCTATTCATGATGAaactctgccaggaggttcagagAGTGAGATGGCCTCAGATGACGATAATCAAGATGAGCCTCCAGAAGAATACACTACATCTGGACATACACAGTCTACAATTGAGATCTCTAGTATACCAACTCCGATGGATGAAATGTTAACTCCGAGAGATGTTATGAGTGATGAGACAGCAAATGATGAAACAGAGTATCCCCCTGAAGACTCTGAAAAGTATGGTATTTCAGGGggctgtgataaaaaaaaatactcaccCTTCAAAGATGCTCCTGAGTTAGATAATTCAAAGAGTGATGACACAGAGTGTCATCATTATCATGCATCTGCCTCTACAATTTCACCACCATCTTCACTGGAAGAGGATAAATCTTATAAGGCATTCTACAGTAAACATAGTGGTGAATTTTTCCTTGACCCAGGGAGTCTGATTTCTGCAACTGCTACCTTGCCCCTTGAACAGTCACCTTCCGAAATCCAAAATTTCAGAATTGATGACATTAATAAAGACATATCATCACCAGTCAAGCCTGCCACTATACTTACACTGTCATCAGGAATTATGGATTCTTCACATAGTCCAGAAGATAAAACACTAGAGGGAACTTCATCTCCACAGTCCCCAGGGCATACACCTTACTATCAATCCCCAGTTGAAGAGATGACTGAAGATATATCACCTGAACAAGTCACTAACAACCGAAGCCCCATTATTGTTGAAGTAACAAGTGACAAAGAGAATACTATCAGAGATGCTAGTCCCACAGATCAAGATTTCCCCATATCACTAACAGGAAGGGTTTCAATCCCTGAGTGTAGTCCAGCTGCTTGTGGAAGTACATCAATGAATGAAGGAAAGTCACCGTTTGATGATCGACCTGTTGGTCAGATTAAATGTCATAACAAAAATTCAGTAAGTGTCGATACTTTTATTAGTTCTTTACTACCACAAACTAGAACAGAATCTTTCTCTGATGCAATTAATTTTACTCCATTCAAGGAGGAGAGTAAAATGTCTATATCTGAGGGAACCACATCAGAAAAGTCAGATACTCCTGATGATGAAGTTGTTGCTGAGGATACATTCTCTCATATTGCATCAGCATCAACGGCATCACTTGCAACAAGCTCTTTACCAGAGCCCACAACAGATGATGTCTCCCCATCATTACATGCTGAGGTGGGTTCCCCACACTCCACAGAGGTAgatgactctctgtctgtttccGTTGTGCAGACTCCAACAACAATGGTAGAAACTGATGTCTCTCCAACTAAAGAAGAAAGCCCCCGACCTATGTCAATCTCTCCAGATGTTTCACCCAAAATGGCTACAGGTAAACCCAAGATTCCTCAGCAGGATACAAATTCCCCTGAACATTCCACAAAGTCATTAGAGTTTGGACAAGAATCCCCAAATTATTCTTTTGCACTGGACTTCAGTAAGCAATCTCCAGAGCATTCAACAACAGGAGGAGCACAGCATGCAGTCACTGAAAATGGCCCAACAGAGGTTGACTACAGCCCTTCAGATGGTTCGGATCTCAAATCAGGAGGAGCTGGTAAGAAACCTGTGCTTTTAAAAGAGTTTGAGACCTCTCAAACTGCCTCTGCTTCACCATTTACACCATCCCAGTCTACACCATCTGTTGCAACACCCTCCCAAATCGGGCCTAGGGAAATGTCCCCTAATGCCGAATCTGTCATAAAAATATCTCCACACAACCAATCACCTGACTCTTTCGTGTCCTCTGACTCTTCTCTAGTTCTGGTTGGTACCAGCAATTCATATGGgctgaataaatgtaaaataagtcCCACCTTACTTTGCAATGAGTATAGTATTTTTAAGGCAGAGAACACCAAACACAATGAGACTGGTTCCCTACCAAAGACTGTTTACCCTTTATCCTCTACAGTATTATCTTGTTCTTTTGATCTAGAGAAGACCAATGTAATTACATTCAGAGGAGGATGTATTCCTTTTCCTTCTGAGTCCAATTCATCCTGTCTTCCTGTATCCTTTAATCTGGTTGAGTCTAACTCTTTCTCACATGTTAAAGAAGCAAGACTGCAGTCTGCAGACTGCAGCACCAGTGGCTCTAAAGATCaagactccttcaaaaaaagCCTCTCTCCACAGTCAATATCAAATGTAGATTTATGTTTGGTTGCCTCCTGTGAATACAGACATCCAAAGACAGAGCTTTCCCCATCTTTTGTAAATCCCAACCCTCTTGAGTACTTGAATGAGGACAATCCTCTGCAAGAGGAAAAGCCATTCCAATATAGTGGAGAACCACCGCCAAGTGGAGGAAAGCAAAAGAGCAAGCAGTGTGAAGAAACACCTCCAACCTCTATCAGTGAATCTGTTCCCTCACAAACAGATTCTGATATTCCTCCTGGAACTGAAGAGTGTCCATCTATAACTGCAGAGGCAAATATTGATTCAGATGATGACTCAGAAACTCTACCAACAGACAGGACACCCACTTCTCATTATCCAGACAGTCCTCCTGACTCATCAAGGGACTTTGCTCCAGTACCACCCTTTCCTGATGTCtgcatggtggatccagaggcTGAGAAAGACAATCAACTGAAAGAGTCTAGAAAAGAAATGCGGGAGaagcaaaaaaagagaatgaatgtTAACAAAATGAACCCATCTTTACCAGGTAGAACAAATGATCTCTCAAAAACAAGTGCAGTCAAAGAGTCAAAAAATGCTTCTACAGAGGAAAAGGATGCCAAAAATGCAACTAATAAGTCTGCATCAAGGGGTGTGAAAACAACAGGAAACAACAGATTGTCAGAACTGAAATACTCTCCAATGTATATGGACCTAGTTTATATCCCAAATCACTGCAGTGCCAAAAATGTTGATTCAGAGTTCTTCAAGAGAGTCCGGTCCTCATATTACGTGGTCAGTGGCAATAATCAGGCAAAGCAGGAGCCCAGTACAGCAGTCCTAGATGCTCTGTTAGAGGGGAAGACTCACTGGGAAAATAACATGCAGGTCACACTTATTCCCACCCATGACACTGATGTTATGCGGGAGTGGTATCAGCAAACCCATGAGAAGCAGCAAGACTTGAATGTTATGGTTCTGGccagcagcagcactgtggttaTGCAAGATGAATCCTTCCCTGCATGCAAGATAGAGCTGTGATTGTGAAGagactgttctgcatgaaatcccaggagatgagcagtttctgaaaccaATCCaccctgtctggcaccaacatccatgccacagtcaaagccACTGAGATTGCATTTTTCcatattctgatgtttgttcttaatattaactgaagctcttgacccaTGCCTACATGAtattatgcactgcactgctgcatcTTGATAGGCTGATTagatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456639 lncRNA downstream 2827 11544646 ~ 11545941 (-) True G385170
TU456640 lncRNA downstream 4208 11541789 ~ 11544560 (-) True G385171
TU456563 lncRNA downstream 102241 11445861 ~ 11446527 (-) True G385109
TU456545 lncRNA downstream 184976 11361533 ~ 11363792 (-) True G385091
TU456518 lncRNA downstream 263213 11285329 ~ 11285555 (-) True G385067
TU456679 lncRNA upstream 18199 11645885 ~ 11647144 (-) True G385200
TU456688 lncRNA upstream 45174 11672860 ~ 11674555 (-) True G385206
TU456700 lncRNA upstream 76870 11704556 ~ 11704757 (-) True G385212
TU456722 lncRNA upstream 206152 11833838 ~ 11835008 (-) True G385229
TU456770 lncRNA upstream 267871 11895557 ~ 11898390 (-) True G385272
XM_034300936.1 mRNA downstream 95849 11355674 ~ 11452919 (-) False mvb12ba
XM_026922407.2 mRNA downstream 95849 11355674 ~ 11452919 (-) True mvb12ba
XM_034300955.1 mRNA downstream 397744 11147131 ~ 11151024 (-) True LOC113523726
XM_026922350.2 mRNA downstream 571645 10834457 ~ 10977123 (-) False mcc
XM_026921484.2 mRNA upstream 67016 11694702 ~ 11698544 (-) False LOC113531030
XM_026921485.2 mRNA upstream 67016 11694702 ~ 11698303 (-) True LOC113531030
XM_026922362.2 mRNA upstream 362391 11990077 ~ 11991776 (-) True foxd1
XM_026921517.2 mRNA upstream 383523 12011209 ~ 12019955 (-) False ankra2
XM_026921516.2 mRNA upstream 383523 12011209 ~ 12019951 (-) False ankra2
TU456386 other downstream 464827 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 942496 10605990 ~ 10606272 (-) True G384811
XR_003403283.1 other downstream 1863995 9684647 ~ 9684773 (-) True LOC113531681
XR_003403281.1 other downstream 1864370 9684272 ~ 9684398 (-) True LOC113531679
XR_003403284.2 other downstream 1865663 9682981 ~ 9683105 (-) True LOC113531682
XR_003403212.2 other upstream 63548 11691234 ~ 11698544 (-) False LOC113531030
XR_003403280.1 other upstream 2185547 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 2287678 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 3288976 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 4749899 16377585 ~ 16380787 (-) False LOC113531235

Expression Profile