RNA id: XM_034300713.1


Basic Information

Item Value
RNA id XM_034300713.1
length 5432
RNA type mRNA
GC content 0.41
exon number 10
gene id coro1cb
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10691244 ~ 10782990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagtgatgagagagaggaacaagagagagaatgagatagGACGGGATAGTTTAATACTCATTCAGTATGTCATGCTCATATGCTATTGGTAACCGGGACTGATATGTTTTCTCCACAGATGCCAAGGGACAGAaacaggacaaagttctggtaACAGAGACAGCTTTTGCTAACACAGAGGATTACTATGAGCTGTTAAacaaggaagaggaggaagtttAATTTAAGAAACCTGTCCAGGACAGTGGCGAGAGCGCTCCAATCACTCCAAAACTGACCAGGCATATATACAAGCACAGAACTCCTCACTGGATGGCTATTCTGTTCAAGAACGAAGGAAATTTTCTGCTGATGAAAACAGTAAACCTTCACCCAACCAAAGTGGAAATGCAGTCTGTGACAAAGAGGACTGGAATGTATTTGGGAATGTCTAGAAAACAGATACACAACTGACCCCAGTAAGAGGTCTGTACAGCCTGGAGTCAGGAATACTCTAAAAGGACACTTAGGTACTAAAGAGCCACACCACAATTAGCACAATGGAAATGCAAGAGACCGACAGTGTAAAGTTAATGACTGACTTAACTCTGTCTGATTTCACAGATCCTCCCAACATGTCAGAATGTCTAATCAGTTCAAGAGAGAATGACTGTGCACTTCTTGAGACCAATGGCATCTCATCAACATCATACAGACAGAGCAGTAATATAAACAGGGACGAAGGAAGAAGAGACAATATGAATGACAcggagaaaagaaagagggatGAATCTCTACCTATAACAGTTTTGAATTTGTCAGAGAACAAAGACTGCAGTTTAGGCAAAGGTAAGGAAAAAGAATCGTCTTTTTCTGCAGATATGGGTAGGATAAATCAGAGGAACTACTCAGGCAAACATAGCTGTTCACAACAAGAGACATCTGCATCATTTGACTTGACAAACTCTGACCCTGAGGCTATTACAGATCTCAACAGTTCAGATGAAGTTCTCGTCCAGTTAAAAATTGAGGAAGCCTTTGAGCTAAAAGGGTCAAGCACATCCCAAGCAGACTTGAATCAAAACAGTGTTTTGACTGATCATGAATTGATCATGCTCAAACATGGAAAAGACACATCAACTTTTATGGAAAACTACCCAATGGCCATATCACATGGGCATCTAGATGAATTGAGTGATCAATTACCAGTTACACTGGAACCTCACATAGCCAAAGTGCAATTGTTTGAAGGAATAAGGTTGTGTGGGAAAAGAGACTGTGAAATAGTTAATCAAACAGATGTCTATTCTCCTTCAGCAGAGCTTAAGATAGCCCCTGATAGAGTCCCACATCAGAAAAGCAATAATTCACCATTACAAAAGTTATCAATTAACTGTAGTGTAGAGTCACATTTTGGAACAGGAGAGGCACTCAAGAAAAGAAGACTTGAGTCAAATAAAGAAGTGAATGACACCAATACAGATAACGTCGATGGAAGAGAGATAATCACAGCTTCCTTGATACAAGAAAAAGACCCTTCCTACTTTACTGCTATCATTACACCCCCAGACCAAATTCACATATTATCTGTCCCTGAAACTACTATGATCTCAGACAGCTTGGTAAGAGATACCCCAAAACAAAAATCAGCTAAAAGTAAAGGACCACCTCCACCTGTTCCAAAGAAGCCAAAAAATCCTTTTTGTAAAGATGTTGCACATGCAATAGACATGCCTCGGCCATATTCTGAACTTCTacagaaaaacatcaaaaagGGAAGAAGAGAGTCAGCATTACACTATGTCACTGAGGACTTTGACAAGTCCCCTCCAGATCTAGACATGTTGTCTTTTTGTCCAGGCACATTAGACTCACCATCCTACATGTGTGTACCAGGAGGTTTTGTCCCTGGTTTTCAGCCTGAAGTAGATGTTCCTGCAATTTATTCGGATTTAGATGACATGGAAGACATGGACATTTGGACAAAAATGGTGGACATTCTCCCTGAACCAGGAGAGTTGGACATATCTCAGATAAGACACATAttagaaaaaaaggcaaaaattaAAGGCCCTCCACCACCAGTACCAAAGAAGCCACTAAATCCATTTGTTGCCATTGAGAAAGATAATGTCTTGCCAATCAATGTCTCAATTTCAAAAGACACAGCAGGCATTTTAACATATGAAAGTTGTGACTACAAACCATATATGCACAGAACTGTGCATGAGGAGGACCCAAAAACAATCTTTGCTACAGACAGAGACAATCTTCTAGTTACATATAGCAACTCGGATATCTtggatgaaaatatttttttgagaTTCAGACCAGAACTCATTAGGCAAAGTGATAATGTACATAAGAAAAGGACACAGCAAAGCAGCAGAGATAATGTTGGAAACCAGGGTAATAAAGTATTGGAAATAACCAAAACCTCTGATTTCAAAAAGCCTTTCTCATATCAAATGGAAAGGAGACTGTCACCAAAGAAAGagatgaTCAGGCGTGTGGTTCGGCAGAGCAAATTCCGCCATGTTTTTGGCCAGGCGGTGAAAAATGATCAGTGCTATGATGACATCAGGGTGTCACGGGTCACCTGGGACAGCGCCTTCTGTGCTGTCAACCCCAAATTTGTTGCCATCATTGTGGAAGCCAGCGGGGGTGGAGCCTTTATTGTCCTCCCTCTTCAAAAGACAGGTCGTATCGATAAGGCCTACCCAACTGTCTGCGGACACACAGGCCCCGTGCTGGACATCGACTGGTGCCCTCACAATGATCACGTCATTGCCAGCGGGTCTGAAGATTGTACTATAATgGTATGGCAGATCCCAGAGAACGGACTCACTGCTCCACTCTCAGAGCCCGTTGTGGTGTTAGAGGGACACTCCAAGCGGGTTGGCATCGTGACATGGCACCCCACAGTCCGTAATGTCCTCCTCAGTGCTGGGTGTGATAATGTGATTTTGATCTGGAACGTGGGCACTGGCGAGGCCCTCATCACACTGGATGACATGCACCCAGACATGATCTTCAGCGTGTGCTGGAACCACAATGGCAGCCTCATCTGCACCACCTGCAAGGACAAGAAAGTGCGCGTCATTGACCCTCGCAAGGCCAAGATCATTGCAGAGAAGGATAAAGCTCATGAGGGTTCACGGCCCATGAGGGCCATCTTTCTCGCTGATGGCAACATCTTCACCACTGGCTTTAGCCGCATGAGTGAGAGACAACTGGCCTTATGGAACTCGAAAAACTTGGATGAGCCAATCTCAGTACATGAGATGGACACCAGCAATGGAGTGCTACTTCCCTTCTATGACCCGGACACTAACATTGTCTACCTGTGTGGAAAGTCAGACCTGTTCCAGGATGATCTGTATCCAGACACAGCTGGACCAGATTGGGCCTTGGAAGCAGAGGAGTGGTTTGAAGGCAAGAACGGTGATCCTATCCTAATTTCCCTCAAACATGGTTATGTCCCTGGCAAGAACCGTGACCTCAAGGTGGTCAAAAAGAATGTTCTGGACAACAAGTCACCCAAAAAGGTGGAGGAGATGTCAGTTCTTCAAAAGCCTGCGTCTCCTCAGCTCACTAGAaaaaatgaagtgaagttgGAGGAGCTGCTCCGAGAAGTGAAATCACTCAGAGACCTGGTGACACTTCAGGACAGGCGAATCACCAAACTCGAAGAGCAGATGGCCAAAGTGGCAATCTGAGGCACTGCTACAGCTCTGAGTCACCATGTCAGAATATGAAGAGATACATTTCAGAGGGCCAgtcactgccaaaaaaaaaaaaaaaatcacagttcaACTTGATCATTCCtcttggtgatttttttttgtgactacGACTTGAAGCAACATTCCGATATGGACGTTATCATCTTGCCTGCCCTGAGCATTCATTAGCGAATAGCAAAAAACAGATgaattttgctttgtgttgttttttcatgGTCTAGTGGGTTTAATTGATAAATATTTTCGATTTTTAGATTTCatgattttcttccttttttttttttgattttgtaaaGTTGTGATCCTTTGAACTTTTGCACCAAGTGCCAAATCCCCTAGTGTTTTCTGTGAGTGTGTCAGTATTactcttcttttatttctttgtgcTGCCAAATGTGAGGTGCACCTGACCTGCCTATtgtgttgcttttattttaatccTTTTTCTGGCTGGACTTTACACTGTCTGTTAATCTTTTCAAGACAGGACATTAGGAAGGTTTAGcctctctctgttcatctcaGCTATACAGGTTAAAGGTTACAGTAATGTGACACAGaaattaatcagaaataaaatgagCATTAACTGAGGGTAAAAAAGACCtagcacaaacaaaaacacttcaggtaAAAGCAGCATTGAACAGCATGGTGCCTAATTGAGAAACACTCACCATATGCCACGATTTTTGCATTAATTCCCTGCTGCTCACTGTAGTGGATTTTTATTTCAAGCTGTCACTATCAGGGTGTACTAATTACAATAAATGCATTACACTTAGATGATTTTGATATATTTATCAAGTTCTCCAAAAGCAATAAAGCAAAGGTGTTTGAGTGAGAATCTAAATTTTTTTCACTGATCTTCTAAATCTAATCTGTAGTTGCTTTTTACTGATAGGACTTTCAGCAGTTCATTTGACTTATAACTTATATACAaagttataatataaaattaaagctCTAATCATTGGCCCCCTTaagaaaatcaatttaaatacTGCTgctatttgttcattttaacttCATTACAACTCACCTGCTTATTAATAGAGCTATCCAGCCACTTTGTCTATTTGAAATGTaagtacagtcaggtccataaatatttggacaatgacagttaTTTACGTGTCTACCAAGTATACAGTATTTGATATTAAATGTAGGATGATTTACAGCACTCTTTATATGTGGACCCCCCtgcccccccctttttttttgtaaactaatTGCACAGTTGAACACACATTAAAGAAagtgttgtaattcctacaccattcaccCAGTGTAGTGAACTAAATTAACGCTAACGCTAATATCTagggacctgactgtatatattaaaaaaggcTGCAGTATGTCCATGTGCTCTACCTTATGCACCATTTTCAAATCATCCTAGTCACATAATGGTAACAGACTCTGATTTTAAATCCACTCTTCTCTGAGCTGACATCTGAACTTGGTCTTCATGAAGCAGTGGCTACCAGCTGGCCCTCACCCTTGTAAATGATATGTAGTGGTGCCTCTTCTTGTATAACTGATTTTAGCCTGGCCCCCCTCAAAAGTTTCTGGCTGGAGCTCAACTGACATTAACCTGAACACTTATGTGTCCTAAACCATCGTGTGCATGCATTCCAGGTTTCACTAAAACAAGAGTCTACACCCACAATAAACCATGTTCATATTATGTTATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456260 lncRNA downstream 7640 10683395 ~ 10683604 (-) True G384850
TU456259 lncRNA downstream 8821 10682220 ~ 10682423 (-) True G384849
TU456216 lncRNA downstream 92861 10598127 ~ 10598383 (-) True G384806
TU456214 lncRNA downstream 96179 10594841 ~ 10595065 (-) True G384804
TU456209 lncRNA downstream 103665 10587348 ~ 10587579 (-) True G384799
TU456342 lncRNA upstream 8337 10773448 ~ 10773716 (-) True G384922
TU456345 lncRNA upstream 19881 10784992 ~ 10785310 (-) True G384925
TU456349 lncRNA upstream 20484 10785595 ~ 10819760 (-) True G384927
TU456350 lncRNA upstream 20484 10785595 ~ 10798518 (-) False G384927
TU456353 lncRNA upstream 56526 10821637 ~ 10825954 (-) True G384928
XM_026921990.2 mRNA downstream 24122 10558236 ~ 10667122 (-) True ssh1b
XM_026921992.2 mRNA downstream 24122 10559565 ~ 10667122 (-) False ssh1b
XM_026921991.2 mRNA downstream 24387 10558236 ~ 10666857 (-) False ssh1b
XM_034300812.1 mRNA downstream 179534 10507836 ~ 10511710 (-) False ungb
XM_026922417.2 mRNA downstream 179534 10507836 ~ 10511710 (-) True ungb
XM_026922349.2 mRNA upstream 69346 10834457 ~ 10981914 (-) True mcc
XM_026922350.2 mRNA upstream 69346 10834457 ~ 10977123 (-) False mcc
XM_026922348.2 mRNA upstream 69346 10834457 ~ 10975345 (-) False mcc
XM_034300955.1 mRNA upstream 382020 11147131 ~ 11151024 (-) True LOC113523726
XM_034300936.1 mRNA upstream 590563 11355674 ~ 11452919 (-) False mvb12ba
TU456221 other downstream 84972 10605990 ~ 10606272 (-) True G384811
XR_003403283.1 other downstream 1006471 9684647 ~ 9684773 (-) True LOC113531681
XR_003403281.1 other downstream 1006846 9684272 ~ 9684398 (-) True LOC113531679
XR_003403284.2 other downstream 1008139 9682981 ~ 9683105 (-) True LOC113531682
XR_003403282.1 other downstream 1008511 9682607 ~ 9682733 (-) True LOC113531680
TU456386 other upstream 313601 11078712 ~ 11083941 (-) True G384960
XR_004577405.1 other upstream 856551 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other upstream 856551 11621662 ~ 11627522 (-) False map1b
XR_003403212.2 other upstream 926123 11691234 ~ 11698544 (-) False LOC113531030
XR_003403280.1 other upstream 3048122 13813233 ~ 13813329 (-) True LOC113531678

Expression Profile