G383841


Basic Information

Item Value
gene id G383841
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9095685 ~ 9097398 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455050
CTTCCCCGTGATTCAGCGCACTCCGGTTCCTCCGCGCACTCCGGTTTCCTACCCCAATCCAAAGACAAGcgttgtaggctgattggtatttccaaattgtctgtagtgtgtgaatggattgtgccctgtgatgggttggcaccctgtccagggtgtcctcctccttgtgccctgagtcccctgggataggcttcaggctccccaTGATCCTGCTTAGGATAAGagagaagatggatggatggatttacaGTATTTAGTAATTATGTCTTTGTAGTATTGGAGCTTTAAAGAGCATGTCAGGAACATAGGGTACTGTCCAGCTGTCCCACTGAAACACAGTATTCTTTTGTAGATTTTAATCTTACATATATGATTACATTAATGATCTATAAAAGTAACAAATGCAACAGCATTACAAGCTTTCACAATCCCAGTGCCCTGCCTAACACCACAGGTCTCGTGAGGTAGTGTGTCCTCTCCTCATGATCTTAATGATTACTCAAAGCCTTGCTATGTGCTCAAACACTTTCTTCCAAAGAATTATAACGAGATACGGAGGTGTGGTTGCAGTCATGTTCTGTACTTAACAGTTTGCATAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455050 True 602 lncRNA 0.44 2 9095685 9097398

Neighbor

gene id symbol gene type direction distance location
adamts15a LOC108260351 coding downstream 320443 8755639 ~ 8775242 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding downstream 505158 8580097 ~ 8590527 (-)
stk36 LOC108260317,LOC108271363,LOC107722762,LOC107598122 coding downstream 516240 8567285 ~ 8579445 (-)
hmbsa hmbs,hmbsa,LOC107717875,LOC107722788 coding downstream 613232 8467213 ~ 8482453 (-)
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding downstream 679505 8407590 ~ 8416180 (-)
thy1 NA coding upstream 8178 9105576 ~ 9108781 (-)
si:ch211-215c18.3 NA coding upstream 16046 9113444 ~ 9123479 (-)
timm22 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673 coding upstream 191613 9289011 ~ 9292581 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107587481,LOC107726289 coding upstream 203776 9301174 ~ 9308503 (-)
usp20 usp20 coding upstream 223259 9320657 ~ 9346311 (-)
LOC117596239 NA non-coding downstream 263406 8814661 ~ 8832279 (-)
G383629 NA non-coding downstream 319112 8776251 ~ 8776573 (-)
G383538 NA non-coding downstream 545151 8549013 ~ 8550534 (-)
G383537 LOC108260305 non-coding downstream 548221 8547182 ~ 8547464 (-)
G383536 NA non-coding downstream 549371 8545431 ~ 8546314 (-)
G383893 NA non-coding upstream 74440 9171838 ~ 9172118 (-)
G384007 NA non-coding upstream 89253 9186651 ~ 9186880 (-)
G384008 LOC108260071 non-coding upstream 91587 9188985 ~ 9189524 (-)
G384011 NA non-coding upstream 94857 9192255 ~ 9192454 (-)
G384015 NA non-coding upstream 100385 9197783 ~ 9197992 (-)
f11r.1 f11r other downstream 11601 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 25426 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 86999 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 255921 8837678 ~ 8839764 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other downstream 628673 8466359 ~ 8467012 (-)
LOC113531664 NA other upstream 143318 9240716 ~ 9255445 (-)
G384811 NA other upstream 1508592 10605990 ~ 10606272 (-)
G384960 NA other upstream 1981314 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 2448911 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 2593836 11691234 ~ 11698544 (-)

Expression


Co-expression Network