RNA id: TU454625


Basic Information

Item Value
RNA id TU454625
length 654
RNA type TUCP
GC content 0.54
exon number 1
gene id G383467
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8466359 ~ 8467012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTGTCAAGTTAGcgaaaaaacatttattcagaaTCGTAGAAaagcacattaacacacatggAAACAATATGGACAATGGAAGTTGCTCTTTTTAGGTAAATTGGGCGGCCCTTAAAAGGGCCTTTGGGTTTTAATGTTAATCAGCACGAGTCCGGGTCATTGTTCAGTATTCTTGCGACTGAGAGGAGCTTTTCTTTCCCGCCTTGCCGGAACTCGGCGCGGCCTGCCCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAACACACCACCCTGAGCGATGGTCACTCCGCCCAGCAGTTTGTTCAACTCTTCGTCGTTGCGAACAGCGAGCTGAAGATGCCGAGGAATGATGCGGGTCTTCTTGTTGTCCCGGGCTGCGTTACCCGCCAACTCCAGGATCTCAGCGGTCAGATACTCGAGCACGGCGGCCAGGTACACAGGAGCCCCAGCACCGACCCGCTCAGCGTAGTTTCCTTTCCGCAGCAGGCGATGCACACGGCCCACGGGGAACTGAAGACCAGCGCGGGAGCTGCGAGTCTTAGCCTTAGCGCGGGCTTTTCCTCCGGTTTTGCCTCTTCCAGACATGTTCGTGgaagtcttcttcttcttcttcttcttcttctgcttcttccaGCTAAAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454547 lncRNA downstream 78120 8387745 ~ 8388239 (-) False hinfp
TU454548 lncRNA downstream 78217 8387472 ~ 8388142 (-) False hinfp
TU454519 lncRNA downstream 146566 8319585 ~ 8319793 (-) True G383386
XR_004577386.1 lncRNA downstream 182048 8270854 ~ 8284311 (-) True LOC117596218
TU454495 lncRNA downstream 303194 8162782 ~ 8163165 (-) True G383366
TU454673 lncRNA upstream 43579 8510591 ~ 8510815 (-) True G383515
TU454682 lncRNA upstream 49349 8516361 ~ 8517669 (-) True G383522
TU454683 lncRNA upstream 51432 8518444 ~ 8518890 (-) True G383523
TU454686 lncRNA upstream 54685 8521697 ~ 8522292 (-) True G383526
TU454687 lncRNA upstream 58296 8525308 ~ 8526588 (-) True G383527
XM_026922073.2 mRNA downstream 50179 8407590 ~ 8416180 (-) True dpagt1
XM_034300766.1 mRNA downstream 68004 8382695 ~ 8398355 (-) True hinfp
XM_034300767.1 mRNA downstream 68004 8382700 ~ 8398355 (-) False hinfp
XM_026922065.2 mRNA downstream 86917 8352400 ~ 8379442 (-) True abcg4a
XM_034300764.1 mRNA downstream 88867 8352400 ~ 8377492 (-) False abcg4a
XM_034300768.1 mRNA upstream 201 8467213 ~ 8482453 (-) False hmbsa
XM_026922074.2 mRNA upstream 201 8467213 ~ 8481038 (-) True hmbsa
XM_026922075.2 mRNA upstream 201 8467213 ~ 8478777 (-) False hmbsa
XM_034300763.1 mRNA upstream 100273 8567285 ~ 8579445 (-) True stk36
XM_026922062.2 mRNA upstream 100273 8567285 ~ 8579444 (-) False stk36
XR_003403254.2 other downstream 118090 8338508 ~ 8348269 (-) False pdzd3b
XR_004577425.1 other downstream 479626 7889060 ~ 7986733 (-) False atp2a3
TU453773 other downstream 1106388 7275671 ~ 7359971 (-) True G382719
TU453022 other downstream 2058521 6405691 ~ 6407838 (-) False emc6
TU453021 other downstream 2058859 6404838 ~ 6407500 (-) False emc6
TU454856 other upstream 370667 8837679 ~ 8839734 (-) False timm8b
TU454857 other upstream 370713 8837725 ~ 8839734 (-) False timm8b
TU454858 other upstream 370713 8837725 ~ 8839764 (-) False timm8b
TU454979 other upstream 452398 8919410 ~ 9008645 (-) False LOC113531288
TU455042 other upstream 569854 9036866 ~ 9070250 (-) False ubash3ba

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060503 True 626 mRNA 0.52 1 NC_007116.7 30534702 ~ 30535327 (-)
rainbow trout (Oncorhynchus mykiss) TU1025780 True 650 TUCP 0.51 2 NC_048574.1 52450218 ~ 52475365 (+)