RNA id: TU454686


Basic Information

Item Value
RNA id TU454686
length 596
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G383526
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8521697 ~ 8522292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAATGTAATTCATATTCAGAGCATGTCCTGTgctgtctctgcctctgtcaCTGAATTGATATTGATGCTGTCTTTcttttgattaaaatatatattgtatctCTAGATTGATTCATATTTATTCCTGATAGCAAGGACAAATCAGTGCAACATCTGAACTAACATCATATGTGCAATATGTGCTATTTGAGATCATAAGTCCTAAGTTACAAACTTCCTGTAGTCTGATACTTGttacataaacaaaataaattaggTTGTCTATCCTAAAAACACTCTTTCACGGCTCACTTCTCTTCTTACCAGATGGCCAGCAGTGGCACAAACGCTCACATGCACAACCCTGTGAGAGTTCTCGCACAGAACAGTCTCTACGGTTTACaaaaaatggtgtgaaaaacaaaaatattcaatgaacggcagttctgtgggtggaaacatcttgttgatgagagtggTCAGAGAAGAATAGCCATACAAATTTGAGCTGATAGGATGTCTACTATAACtcaataagcactctttacatccatggtgagcagaaaagcattggaaaaatgttgtctggtccaatTAATCTTGATGTCTTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454683 lncRNA downstream 2807 8518444 ~ 8518890 (-) True G383523
TU454682 lncRNA downstream 4028 8516361 ~ 8517669 (-) True G383522
TU454673 lncRNA downstream 10882 8510591 ~ 8510815 (-) True G383515
TU454547 lncRNA downstream 133458 8387745 ~ 8388239 (-) False hinfp
TU454548 lncRNA downstream 133555 8387472 ~ 8388142 (-) False hinfp
TU454687 lncRNA upstream 3016 8525308 ~ 8526588 (-) True G383527
TU454689 lncRNA upstream 5969 8528261 ~ 8528521 (-) True G383529
TU454692 lncRNA upstream 9220 8531512 ~ 8532648 (-) True G383531
TU454695 lncRNA upstream 10979 8533271 ~ 8536290 (-) True G383534
TU454694 lncRNA upstream 15652 8537944 ~ 8538989 (-) True G383533
XM_034300768.1 mRNA downstream 39244 8467213 ~ 8482453 (-) False hmbsa
XM_026922074.2 mRNA downstream 40659 8467213 ~ 8481038 (-) True hmbsa
XM_026922075.2 mRNA downstream 42920 8467213 ~ 8478777 (-) False hmbsa
XM_026922073.2 mRNA downstream 105517 8407590 ~ 8416180 (-) True dpagt1
XM_034300766.1 mRNA downstream 123342 8382695 ~ 8398355 (-) True hinfp
XM_034300763.1 mRNA upstream 44993 8567285 ~ 8579445 (-) True stk36
XM_026922062.2 mRNA upstream 44993 8567285 ~ 8579444 (-) False stk36
XM_026922063.2 mRNA upstream 44993 8567285 ~ 8579444 (-) False stk36
XM_034300772.1 mRNA upstream 57805 8580097 ~ 8590527 (-) False c27h11orf53
XM_034300771.1 mRNA upstream 57805 8580097 ~ 8590527 (-) False c27h11orf53
TU454625 other downstream 54685 8466359 ~ 8467012 (-) True G383467
XR_003403254.2 other downstream 173428 8338508 ~ 8348269 (-) False pdzd3b
XR_004577425.1 other downstream 534964 7889060 ~ 7986733 (-) False atp2a3
TU453773 other downstream 1161726 7275671 ~ 7359971 (-) True G382719
TU453022 other downstream 2113859 6405691 ~ 6407838 (-) False emc6
TU454856 other upstream 315387 8837679 ~ 8839734 (-) False timm8b
TU454857 other upstream 315433 8837725 ~ 8839734 (-) False timm8b
TU454858 other upstream 315433 8837725 ~ 8839764 (-) False timm8b
TU454979 other upstream 397118 8919410 ~ 9008645 (-) False LOC113531288
TU455042 other upstream 514574 9036866 ~ 9070250 (-) False ubash3ba

Expression Profile