G383531 (LOC108260305)


Basic Information

Item Value
gene id G383531
gene name LOC108260305
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8531512 ~ 8532648 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454692
CCTTTTTGAAGATTGCCGCAAGTAGCGTCTCACTTACATAAgcagcatgtaaaaaaaaaaacagactgctGTGAAATTGTGACTTTCCATTTGTGCATACACAAAAGCATTTTGGAATCATTTTGCTTTGCAGGATATGTATAAAGTCACTTGCCAGCTAAacacagtttttgttttgttttttaattccaggaagatgtttagtcattctgtAAAATTTGTGTTCGACCAGTCAGAACCAGTCAGGACAGCAAGTTCCACCCAGTAGTTCCTGGTCAATAGAAATGGACCTCCTCTTGAGCATAAGCCAAAAAGTTTCCCCAGAAATATGCTTCAAGAACATGAGTTCCTGAAAAgattcctgaaaaggttcctgtgaGGGAAACATGCCTAATGCTACAATAGCATTCTAGTATTATTGAAacaacacaatattttaaaaactagtTCTGTGCTTTGTATTACAGCTTTAGTGGGTGTGTAGTGGAAGTCTGACCTCTTGTCTGGAATCCTGTAGCtgctgctccagctcagtgacCCGAGCTTTTAGCTCCTCTACTCGAGCCAGAATCCTGACCCGCTCCTCCACTAGATAACCCAGTTCCTGCTGCCCCATTCCGGCAGTGTCCTCATGCTGAGGGTGGCTCTCAGTGCTGCTACACTCCTCTTTCAGGTTCTCGTCATCACACTCTCCCAGtcgatgtgtgtgagtgtgtgagcgctGCACTGCCACACCCACCAGGTCGGGGCCAGGTCGCTGGTCCTCGGTCCCAGGGAACTGACCTGCCCTCCCTGTCTCCATGTCTGCCACAGGGTCCCCTTTATTATACTCGGCACACAGGCTCAGAATGGTCTCTAGCCTCTGTCGttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454692 True 871 lncRNA 0.46 2 8531512 8532648

Neighbor

gene id symbol gene type direction distance location
hmbsa hmbs,hmbsa,LOC107717875,LOC107722788 coding downstream 49059 8467213 ~ 8482453 (-)
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding downstream 115332 8407590 ~ 8416180 (-)
abcg4a abcg4,abcg4a,LOC108261268,LOC108429752,LOC107717882,LOC107722792,LOC107677424,LOC107587350 coding downstream 152070 8352400 ~ 8379442 (-)
atp5l atp5l,LOC107664523,LOC107597515,LOC108233819,LOC107098727,LOC107587353,LOC107387014 coding downstream 195265 8332432 ~ 8336247 (-)
ftr83 LOC108260410,LOC108429748,LOC107712363,LOC107587475,LOC107677412,LOC107664511,LOC107722782 coding downstream 219097 8306374 ~ 8312415 (-)
stk36 LOC108260317,LOC108271363,LOC107722762,LOC107598122 coding upstream 34637 8567285 ~ 8579445 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding upstream 47449 8580097 ~ 8590527 (-)
adamts15a LOC108260351 coding upstream 222991 8755639 ~ 8775242 (-)
usf1l LOC108259962,LOC103042741 coding upstream 557079 9089727 ~ 9101289 (-)
thy1 NA coding upstream 572928 9105576 ~ 9108781 (-)
G383529 NA non-coding downstream 2991 8528261 ~ 8528521 (-)
G383527 LOC108260305 non-coding downstream 4924 8525308 ~ 8526588 (-)
G383526 NA non-coding downstream 9220 8521697 ~ 8522292 (-)
G383523 NA non-coding downstream 12622 8518444 ~ 8518890 (-)
G383522 NA non-coding downstream 13843 8516361 ~ 8517669 (-)
G383534 NA non-coding upstream 623 8533271 ~ 8536290 (-)
G383533 NA non-coding upstream 5296 8537944 ~ 8538989 (-)
G383532 NA non-coding upstream 6504 8539152 ~ 8540611 (-)
G383536 NA non-coding upstream 12783 8545431 ~ 8546314 (-)
G383537 LOC108260305 non-coding upstream 14534 8547182 ~ 8547464 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other downstream 64500 8466359 ~ 8467012 (-)
hinfp hinfp,LOC107677425,LOC107662995 other downstream 133157 8382695 ~ 8398355 (-)
pdzd3b LOC108260234 other downstream 183243 8338508 ~ 8348269 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other downstream 544779 7889060 ~ 7986733 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other downstream 635783 7799638 ~ 7895729 (-)
timm8b timm8b,LOC107598437,LOC107717885 other upstream 305030 8837678 ~ 8839764 (-)
LOC113531288 NA other upstream 386762 8919410 ~ 9008686 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other upstream 488067 9020715 ~ 9070259 (-)
f11r.1 f11r other upstream 541104 9073752 ~ 9084084 (-)
LOC113531664 NA other upstream 708068 9240716 ~ 9255445 (-)

Expression


Co-expression Network