RNA id: TU454694


Basic Information

Item Value
RNA id TU454694
length 1046
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G383533
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8537944 ~ 8538989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcctgatatttacatctagatgtgttaaacaacttagagcAACAACTTTGGGCACCTTGGGGCAAATTTTAGGGTATCTTTTGCTCACCAATTTCTAGGTGAGCAAAAGAATAGgcacagatagtcttaaagtaagttaaagtaaataatacttaatatttggttgcatatcccttgcttgcaataactgcatcaagccagtgacccactcacatcaccaaactgttgcattcttcttttgtactgcagcttctttcagttgttgtttcagtcttcttcaaatggtggattgtgataccttcaccctgcCCTATCCTcctgttggtgatgtcactaactGTTGTTTtcgggtttttcttcacagctctcacagtgtttgtcatcaactgctgctgttttccttggctgacctgttcagtgtctggttgttagtacaccagtggtttctttctttatcaggACATTCCTAATTGTTGTACtagctatgcccaatgcttgggcagtggctctgatcgatttgccctcaagaaatgaaagctcaAATTCTAATCTATCATTTCACATTCATCCTtttatctcaaacccaaatagcttcagtgtatagcaaaaacaaaagaattggccttgccattccaaaacttccggaggggactgtatgtcaCCTGCCCATCACATCCTAACACCTGTActcctactcattcatgcagttgaagattggaaagaGATCAGGCAATGTAtctcttcaactgcccagtttcagtgaacTTGTGCCTAGTGTAGCATTAGAGTATTCTTGGCTTGTAGTAGTGGAACCTggtgtggttttctgctgttgtagcccatgtttttaacattctgtgcattttgaaatgcttttctgttcatcacggttgtaaagagtggttacttgCGTTACCGTAGCCCTCTTGGCCATTCTGGTCATTGTCCATCACtggatatattttttgtttttcacatgattctgtgtaaaccctagagactatagagactgtgcgtgaaaatcccaattatgtgcagtttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454695 lncRNA downstream 1654 8533271 ~ 8536290 (-) True G383534
TU454692 lncRNA downstream 5296 8531512 ~ 8532648 (-) True G383531
TU454689 lncRNA downstream 9423 8528261 ~ 8528521 (-) True G383529
TU454687 lncRNA downstream 11356 8525308 ~ 8526588 (-) True G383527
TU454686 lncRNA downstream 15652 8521697 ~ 8522292 (-) True G383526
TU454693 lncRNA upstream 163 8539152 ~ 8540611 (-) True G383532
TU454697 lncRNA upstream 6442 8545431 ~ 8546314 (-) True G383536
TU454701 lncRNA upstream 8193 8547182 ~ 8547464 (-) True G383537
TU454705 lncRNA upstream 10024 8549013 ~ 8550534 (-) True G383538
TU454706 lncRNA upstream 10024 8549013 ~ 8550422 (-) False G383538
XM_034300768.1 mRNA downstream 55491 8467213 ~ 8482453 (-) False hmbsa
XM_026922074.2 mRNA downstream 56906 8467213 ~ 8481038 (-) True hmbsa
XM_026922075.2 mRNA downstream 59167 8467213 ~ 8478777 (-) False hmbsa
XM_026922073.2 mRNA downstream 121764 8407590 ~ 8416180 (-) True dpagt1
XM_034300766.1 mRNA downstream 139589 8382695 ~ 8398355 (-) True hinfp
XM_034300763.1 mRNA upstream 28296 8567285 ~ 8579445 (-) True stk36
XM_026922062.2 mRNA upstream 28296 8567285 ~ 8579444 (-) False stk36
XM_026922063.2 mRNA upstream 28296 8567285 ~ 8579444 (-) False stk36
XM_034300772.1 mRNA upstream 41108 8580097 ~ 8590527 (-) False c27h11orf53
XM_034300771.1 mRNA upstream 41108 8580097 ~ 8590527 (-) False c27h11orf53
TU454625 other downstream 70932 8466359 ~ 8467012 (-) True G383467
XR_003403254.2 other downstream 189675 8338508 ~ 8348269 (-) False pdzd3b
XR_004577425.1 other downstream 551211 7889060 ~ 7986733 (-) False atp2a3
TU453773 other downstream 1177973 7275671 ~ 7359971 (-) True G382719
TU453022 other downstream 2130106 6405691 ~ 6407838 (-) False emc6
TU454856 other upstream 298690 8837679 ~ 8839734 (-) False timm8b
TU454857 other upstream 298736 8837725 ~ 8839734 (-) False timm8b
TU454858 other upstream 298736 8837725 ~ 8839764 (-) False timm8b
TU454979 other upstream 380421 8919410 ~ 9008645 (-) False LOC113531288
TU455042 other upstream 497877 9036866 ~ 9070250 (-) False ubash3ba

Expression Profile