zdhhc12b (zdhhc12,zdhhc12b,LOC103035983,LOC108429732,LOC107712389,LOC107737479,LOC107681847)


Basic Information

Item Value
gene id zdhhc12b
gene name zdhhc12,zdhhc12b,LOC103035983,LOC108429732,LOC107712389,LOC107737479,LOC107681847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7434015 ~ 7441994 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921499.2
CAGCAGCCCAGCGGAGCGGAAGTAGCAGCAAGCTAAATACAGAGCCGAGGAGCTGAAAGGAAAGCgttataaataaagtgtttagtTTGAATATGATagatgtttattatatattaggaTAATTAATAACTCTGTCTCGCAAAACGTCCTAGTGCTGAATATCCGGCTTTCCAGTGAGCGAGTGAACGAGGCGGTGTTTATGAGCTGCGCTAGCTAAGCCATGACTTAAACAACGGAAGTGCATTTCATAGCTTGATAGCTGTACTTTATTTCCAACTTGTGATGTTTGTTCGATGTTTATATGAAATACTTTTCTGATTAGGTGTGTAAAATGTACGTCTAAGTATGCTaggatgtttaaaaatgtgttcgGCTCAGGATTTCTCGTCAGAACTGCTCATGTTTTCCTGACATGGGGTATAACGCTGATTCTCTTCCTGCACGACACCGATCTCCGTAGAGAGGAAGAGGCGGGCCGGCTCACGCTGCCCATACTCTTCGTGCTGCTCGTGCTGCTTTCTGTTCTGCTCTACTTTGCTGTGTCACTAATGGATCCCGGGTTTGTGCTGTCCGATGACTGCGACCTACAGTTCACTCTTGGCATCACTGAGGAGCAACAGGACATGATTCCCCAGCCCAAACCATTCCGCCAGCGTCGCTGTGGTCATTGCCTGTTacagCAACCGATGAGATCCAAACATTGCCAGACGTGTCAGCACTGCGTGCGTCGCTATGATCATCACTGTCCGTGGATTGAGAACTGTGTAGGGGAGAGGAACCATCGCTGGTTTGTGCTTTACTTGGCTGTGCAGTTCGTTGTGTTGCTCTGGGGGCTCCACATGgcctgGTCAGGCTTCAGTGACGCTGCGACGTGGTCGTTGTGGCTGAAAACAAACAGCGTTCTGCTGGTGACGTGTGCTGTGGTGGCGCTGCTGGCATTGACCGTGCTGCTCCTCCTGGGCTCCCACCTTTACCTGGTGTCTTTAAACACCACCACCTGGGAGTTCATGTCACGCCACCGCATCTCCTACCTCAAACACTGCGGCATTGACGAGAATCCCTTCGACCGCGGGACCTTGCGCAACCTGTGGAGCTTCTTCTGTGTGTGGAGCACGGTGGTGTGGGAGCAGGTGTACTTCAGGCAAGGCTGCGATCCCGCTTAAAGCACAACCCCGATCAAGTGATTGGAACGTTTTCTGGTAACATAgccaagtaaataaaaacattatgtctTGGTTAGTAATACAGTTCCTAATACATTCCTATTATTGATCCAGCTCTGTAGTGATTCTCAATTGCATGGACATAGTTGTAGTTAGAACCATGTAGAGCCTCAATTATTAGCAAGTCTGATTTGATCAAGAGGTTTGGACTGCTGGTTTTCCTGTGAATAGATCTGTAGGAAATTTTCTTATCAAGTTGCAGCTGCACTTTTTAAACTTAATCTTTAAAGTTAAGAATGTTTCAGCAATGTGAGaaagattgatttatttttttgcatcagTAAGCAACCttcaatattaattaatattaatattgttttcATATAACAATTGGGATACAAAGATAAGAGTCATTTTATTACTAACTCATAGTTCTTTACAAGCTTACCTCGTGTCATATTTTGCCATGACACAAAAGAACGtctgtaaaataaagaaagcggACAATAAGGAGCACAACATCACTTAATGTGGCGATAAAGACAGGGTAAATGACTCGTGTGAAATTTTACAGCATCATCAGTTTCCTCTGTAATTTTTAGACACTTCAGTTTGGGAAGTGCAATGAAAGCgtactacttaaaaaaaaaaaaaaaaaaaaaagaagtaccATTTTTATTGGGTCATTATAGTGGATTTTTCCGAATAGCCcctaaattaaatgtttgttttttttttaagtagaaaaAGCATTGCATAAAGCACTTATGTCAATATGAACAAAGTGGCTGACATAGTGCAGCCGTAACATCGGATTATTTGGTAGTTTTGTAGCTGAACAGCAGAGGTGGAAAACCTAGTTTTAATTGTagtaaaactattatttttaactATTATTAAGCAATTATAGTAGTTGTTACATTTGTGGCATTAAGGCCCAATTCCCCTTCACCATAGCCATACTTAGCCATCTGATACGATTACATGCACAGCAGAATTCAGTGATCCGCTATTATGATTGCAGTATGCACATTGTATAAGCtgtttttcatattattctcgattctgattggtcagaaggtgttgactatTTTCTAttagcatggctctgacagtagttaatgcgcttgttctaatgttatcgtttctatagtaacagcttacgcAGGGACTTGGATGCAATACAGAAATTTGTTCATATGTTgaagtttatttttctgtgaggagacgtttatttagcattttcggacgaagtctccactgtcagcactTTAACAGTAAAGCTGTTAAGGGTTTCAGACATGGatttgtgctttccagttttaagctgcaatttttttttttttttttctgattaacttgaaaataaaaagagagaggatggtgagggaacacCAGTTTATAActgcgataacaggaactataaacagataaaaaacatTCTGTGTCATATAATCACACAACACTGTTAGGTTCAATCATACATATTAGTTGGCTGATAAAATCAGCTCAGAGTCGATGGACTTCTAGGCATCAGTGAAAATCTTGTCAATCAATTACTGATAATGTTTCTTTAAGCTGTACAGGAATACTGTAACTCTTTTGGGTGTGTATACAGTTCATTTGAGGTACACTTAAACTCTTATGGACTCATCGTCATGCACAGCTGTGAAACCATTAAAATTCATCCTTGCAATCCTCTGGCGATTGGGTGAAATCAGACCTCTGCAAAACTCAGAGCCCTAAGACAATGTACTTTAGGTTCCATTTGTTTGACttgttttttatatacatgttgCTGTTTCTGTTGTTTGAGTTTGAGAAACTGACAATCAGATCAGAAAATCCTTATACTGCTACCTTCTTAAATTTTCAGCCATATGAAATTACATCtgctgaaaatattaaatatttaatgatgcCACAAAACAGCTTTCTATAAAAATCCCACTAGCAGTCACACAGGGTTTGtatattaaaatcatataaaatgaaCTACCAGCCTaactattatttttgtataaatatagCCTGTTTTTTTCATACTACCTTTCAATCAGTAAGcaatttaaaaagagaaagagcatgTGTATggttttgaatgtttttagtttttaaccTATTCTGTAATGGTGGTTGTTGAATGGTTGCAATACAGTCTGTACTGTCACTCCTTTATTGATCAAACCATTAGAATGTCTTCAGTGCaatataaagatattttaaaaccTTAAAAGGAACAAGCAATAACTATTTCATTCTCCTTTTAAAATCACTTCCAATGAATTTGCACTTGACTGTTTCAGTATTTGTGCTGAATTCCAATAGACTTAACTCGGCTTTGATTAAAGTTGCTTATGCAATGTTTTTGTGACATGCAATGATGTATTGAGTCGCAGTGGCAGTATTCAATAAACAACAAATGTAgtca

Function

symbol description
zdhhc12b Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC12 (zinc finger DHHC-type palmitoyltransferase 12).
zdhhc12 Enables palmitoyltransferase activity. Involved in protein palmitoylation. Located in Golgi apparatus and endoplasmic reticulum.

NR:

description
PREDICTED: probable palmitoyltransferase ZDHHC12 isoform X2

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921499.2 True 3594 mRNA 0.39 5 7434015 7441994

Neighbor

gene id symbol gene type direction distance location
LOC113531276 LOC108260270 coding downstream 25509 7384508 ~ 7408506 (-)
dhx33 dhx33 coding downstream 159159 7265885 ~ 7274856 (-)
vkorc1l1 vkorc1l1,LOC107719344 coding downstream 177348 7244648 ~ 7256667 (-)
hpda LOC108260398,LOC108413266,LOC105896091 coding downstream 363275 7060062 ~ 7070740 (-)
supt4h1 supt4h1,LOC107654296,LOC107563417 coding downstream 479103 6950274 ~ 6954912 (-)
uap1l1 LOC108260439,LOC108429733 coding upstream 217 7442211 ~ 7450541 (-)
slc25a25b slc25a25,LOC107587368 coding upstream 13596 7455590 ~ 7486624 (-)
si:dkey-220k22.1 LOC108260280 coding upstream 221114 7663108 ~ 7758219 (-)
zzef1 zzef1,LOC107664510,LOC107598082 coding upstream 580991 8022985 ~ 8097142 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357 coding upstream 663037 8105031 ~ 8122841 (-)
G382715 NA non-coding downstream 254107 7102576 ~ 7179908 (-)
G382550 NA non-coding downstream 497399 6936387 ~ 6936616 (-)
G382514 NA non-coding downstream 499411 6933709 ~ 6934604 (-)
G382515 NA non-coding downstream 500886 6930168 ~ 6933129 (-)
G382202 LOC108260093 non-coding downstream 889155 6544276 ~ 6544860 (-)
G382855 NA non-coding upstream 3799 7445793 ~ 7446511 (-)
G382880 NA non-coding upstream 79902 7521896 ~ 7527576 (-)
G382879 NA non-coding upstream 90297 7532291 ~ 7536966 (-)
G382930 NA non-coding upstream 204128 7646122 ~ 7646482 (-)
G383328 NA non-coding upstream 513177 7955171 ~ 7955413 (-)
G382719 cit other downstream 74044 7275671 ~ 7359971 (-)
LOC113531451 LOC108260064 other downstream 609571 6809425 ~ 6824444 (-)
emc6 emc6 other downstream 1026177 6321762 ~ 6407838 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other downstream 1050331 6318977 ~ 6383684 (-)
LOC113531045 NA other downstream 1171549 6260616 ~ 6262466 (-)
si:dkey-220k22.3 NA other upstream 207299 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 357644 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 447066 7889060 ~ 7986733 (-)
pdzd3b LOC108260234 other upstream 896514 8338508 ~ 8348269 (-)
hinfp hinfp,LOC107677425,LOC107662995 other upstream 940701 8382695 ~ 8398355 (-)

Expression


Co-expression Network