G1063601


Basic Information

Item Value
gene id G1063601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34961607 ~ 34962942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1211536
gaattaaaacatttatttcacaAGTCAAAAAACACCTTACAATTAAAATATCTAAATCAGTTCTTATACACAATTCTGGTTCTTGGTATTACTAATCTGTTGTAAACAAATGCTCCTTGTTGCAAGGAAGAAAAGTCCAGTCCACCCGTTTTTAGTTTCCTTTATCGCAACTCCAGATGACATTGAGAAGCAGCAATAGAACCCTTACCATTGCTAAAACTCAGTAATGGTAACGGTTTGATCGCCACCCTCTAGCTTCCAGCAGCGTCTGTCCATCCGTTCGTGTGTGTACTACTGTAGCTATTACATTGAGAGGTGTCAATAGAACCCTTACCATTGCTAAAACTCAGTAATGGTAACGGTTTGATCGCCACCCTCTAGCTTCCAACCGCCAGCAGCGTCTGTCCATCCGTTCGTGTGTGTACTACTGTAGCTATGACATTGAGAGGCGTCAATAGAACCCTTACCATTGCTAAAACTCAGTAATGGTAACGGTTTGATCGCCACCCTCTAGCTTCCAACCAtcgacagtgtgtgtgggtgctgATAGTGGCTAGAAGGGGGAATGAGACCCTGGATAGTACATCATCTATACTGTAGTGTCACCATAACGAACTTACAGTATATGATGATATCCTGTCCAGGGTACAAGACCAACATACAATGTCCCATGATGACTTCACCTAAATGAATACACCTCACATCTGTTCTGTCTGCGTTGTCCTCAGTCTCCTCTTGAAGAACAAAGTGTTATTTAAGGGTGTTGATGGGGCTCTTAACACGCTGCTCTGGTTTACAACCACCAGCACATCTCCAACAGCACCAGGTTGTTCACAGACCCCTGACAGCTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1211536 True 854 lncRNA 0.43 2 34961607 34962942

Neighbor

gene id symbol gene type direction distance location
eral1 eral coding upstream 2003 34954989 ~ 34959604 (+)
shpk shpk coding upstream 140526 34807649 ~ 34821081 (+)
LOC110537497 p2rx5 coding upstream 156138 34778005 ~ 34805469 (+)
ubb ubb coding upstream 190725 34766968 ~ 34770882 (+)
pigl pigl coding upstream 208166 34725810 ~ 34753441 (+)
LOC110537506 LOC106567992 coding downstream 1280 34964222 ~ 34982028 (+)
si:ch211-283g2.1 LOC106567993 coding downstream 78493 35041435 ~ 35069666 (+)
LOC110537511 fam114a2 coding downstream 443895 35406837 ~ 35418103 (+)
LOC110537512 cnot8 coding downstream 455360 35418302 ~ 35421957 (+)
LOC110524522 LOC106605670 coding downstream 505118 35468060 ~ 35471779 (+)
G1063549 NA non-coding upstream 95788 34861460 ~ 34865819 (+)
G1063519 NA non-coding upstream 136949 34824445 ~ 34824658 (+)
G1063507 emc6 non-coding upstream 153977 34805738 ~ 34807630 (+)
G1063410 LOC106603505 non-coding upstream 291145 34665968 ~ 34670462 (+)
G1064355 NA non-coding downstream 73741 35036683 ~ 35036989 (+)
G1064373 LOC106567994 non-coding downstream 108795 35071737 ~ 35080332 (+)
G1064377 NA non-coding downstream 113981 35076923 ~ 35081585 (+)
G1064405 NA non-coding downstream 157134 35120076 ~ 35120318 (+)
G1064487 NA non-coding downstream 253285 35216227 ~ 35217155 (+)
G1062648 NA other upstream 1299658 33658278 ~ 33661949 (+)
G1062537 NA other upstream 1452744 33508319 ~ 33508863 (+)
G1062404 NA other upstream 1595358 33359734 ~ 33366249 (+)
G1060470 NA other upstream 3150260 31811062 ~ 31811347 (+)
G1064849 NA other downstream 524796 35487738 ~ 35488944 (+)
G1065619 NA other downstream 1429692 36392634 ~ 36393022 (+)
G1065620 NA other downstream 1430316 36393258 ~ 36393845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031334 NA non-coding NC_007116.7 CM002889.2 42271035 ~ 42273074 (-)
striped catfish (Pangasianodon hypophthalmus) LOC113531571 NA non-coding NC_047621.1 CM018567.1 6534109 ~ 6535434 (-)
tiger barb (Puntius tetrazona) G37023 NA non-coding NC_056703.1 CM032072.1 15813103 ~ 15814248 (+)