ubb (ubb)


Basic Information

Item Value
gene id ubb
gene name ubb
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34766968 ~ 34770882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623571.2
CAGAACGGACTATGTTTTCAATAGCGGATGGATATTGTCATATGACGCTTTCTACGTCACAACGTTTTCTTTGTATAAATACAATACATGAACCTATTGAACATAGAAGCAAGAAGAAATTATCAAAGACAATTTCGTTTTCTTTGAGGTCAATCGTGCAAAGATGCAGATCTTTGTCAAAACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGTAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGTAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGTAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGACCTTAAGTTTCCCCTGCTTTTTTCAAAAGTGAccaaatatatagatattttattCTTGAAGCCATAAAGGTATTTCGTTTATTTTGTCTTCAGTTTCCTTTCATAGCTTTGAGATGTTATTATACAAAAAATAATGCAACGTGTATCTTAAATTGATTACATGAGGTGTCTTTCACAATGTAAAAGAAACATGGTATATTGTCACACTTGTAATGAAACAATGCTATTTAATTAAACCTATATACATACACTAA
>XM_036937463.1
CAGAACGGACTATGTTTTCAATAGCGGATGGATATTGTCATATGACGCTTTCTACGTCACAACGTTTTCTTTGTATAAATACAATACATGAACCTATTGAACATAGAAGCAAGAAGAAATTATCAAAGACAATTTCGTTTTCTTTGAGGTCAATCGTGCAAAGATGCAGATCTTTGTCAAAACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGTAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGCATGCAGATCTTCGTCAAAACCCTGACAGGTAAGACCATCACCCTCGAGGTTGAGCCAAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGACCTTAAGTTTCCCCTGCTTTTTTCAAAAGTGAccaaatatatagatattttattCTTGAAGCCATAAAGGTATTTCGTTTATTTTGTCTTCAGTTTCCTTTCATAGCTTTGAGATGTTATTATACAAAAAATAATGCAACGTGTATCTTAAATTGATTACATGAGGTGTCTTTCACAATGTAAAAGAAACATGGTATATTGTCACACTTGTAATGAAACAATGCTATTTAATTAAACCTATATACATACACTAA
>TU1211387
TCACAACGTTTTCTTTGTATAAATACAATACATGAACCTATTGAACATAGAAGCAAGAAGAAATTATCAAAGACAATTTCGTTTTCTTTGAGGTCAATCGTGCAAAGATGCAGATCTTTGTCAAAACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCAGACTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGACCTTAAGTTTCCCCTGCTTTTTTCAAAAGTGAccaaatatatagatattttattCTTGAAGCCATAAAGGTATTTCGTTTATTTTGTCTTCAGTTTCCTTTCATAGCTTTGAGATGTTATTATACAAAAAATAATGCAACGTGTATCTTAAATTGATTACATGAGGTGTCTTTCACAATGTAAAAGAAACATGGTATATTGTCACACTTGTAATGAAACAATGCTATTTAATTAAACCTATATACATA

Function

symbol description
ubb Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C).

NR:

description
ubiquitin and ribosomal protein S27a precursor, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623571.2 False 2925 mRNA 0.52 2 34766968 34770882
XM_036937463.1 False 2697 mRNA 0.52 3 34766968 34770882
TU1211387 True 583 TUCP 0.39 3 34767024 34770876

Neighbor

gene id symbol gene type direction distance location
pigl pigl coding upstream 13527 34725810 ~ 34753441 (+)
LOC110537491 adora2b coding upstream 200376 34553585 ~ 34566592 (+)
LOC110537489 LOC106567978 coding upstream 221231 34414388 ~ 34547258 (+)
LOC118937666 NA coding upstream 278541 34486074 ~ 34490407 (+)
abr LOC106567975 coding upstream 406959 34134508 ~ 34360009 (+)
LOC110537497 p2rx5 coding downstream 7123 34778005 ~ 34805469 (+)
shpk shpk coding downstream 36767 34807649 ~ 34821081 (+)
eral1 eral coding downstream 184107 34954989 ~ 34959604 (+)
LOC110537506 LOC106567992 coding downstream 193340 34964222 ~ 34982028 (+)
si:ch211-283g2.1 LOC106567993 coding downstream 270553 35041435 ~ 35069666 (+)
G1063408 NA non-coding upstream 79785 34663563 ~ 34687183 (+)
G1063410 LOC106603505 non-coding upstream 96506 34665968 ~ 34670462 (+)
G1063379 LOC106603505 non-coding upstream 137671 34628644 ~ 34629297 (+)
G1063363 NA non-coding upstream 166100 34600565 ~ 34600868 (+)
G1063507 emc6 non-coding downstream 34856 34805738 ~ 34807630 (+)
G1063519 NA non-coding downstream 53563 34824445 ~ 34824658 (+)
G1063549 NA non-coding downstream 90578 34861460 ~ 34865819 (+)
G1063552 NA non-coding downstream 163740 34934622 ~ 35022695 (+)
G1063601 NA non-coding downstream 190725 34961607 ~ 34962942 (+)
G1062648 NA other upstream 1105019 33658278 ~ 33661949 (+)
G1062537 NA other upstream 1258105 33508319 ~ 33508863 (+)
G1062404 NA other upstream 1400719 33359734 ~ 33366249 (+)
G1060470 NA other upstream 2955621 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 3557611 31207629 ~ 31209357 (+)
LOC110524522 LOC106605670 other downstream 699618 35468060 ~ 35471779 (+)
G1064849 NA other downstream 716856 35487738 ~ 35488944 (+)
G1065619 NA other downstream 1621752 36392634 ~ 36393022 (+)
G1065620 NA other downstream 1622376 36393258 ~ 36393845 (+)

Expression


Co-expression Network