LOC110537506 (LOC106567992)


Basic Information

Item Value
gene id LOC110537506
gene name LOC106567992
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34964222 ~ 34982028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475641.2
tcctttgacctcgaggcttggtttttgctctgacatgcactgtcaactgtggatatagacagGTGGTTCTCCACTCCATGCATAAGTACCAGCCCCGCCTGCACATTGTCCTGTCTCCAGACCCCCACAGCCCCCTGCGCTTCACCTTCCCTGAGGCAGCCTTCATCGCTGTCACTGCCTACCAGAACTCAGAGATAACAAAACTCAAGATAGACAACAACCCCTTTGCAAAAGGCTTTTGTGACAACGGGCTGAACAGAAAAAAGTTCAGAGAAAAGGAAGGACAGAGCTCTGACAAACTAAATCTCAGTGGATTCCCATGGTGCAGTAGGATACAGGACTGATGACATCacatctctctctgctgtccctGACCCATTCATCTCTGCCTTCATGAACTGGGGAGATGCAGCTGCAACCCTGCCCTGTGGCCAAGAGTGATGGAGGGTCCCGGACCAAAggacccacaacaaccacaaacacaacacacttcGTACCTGGGCCTATGACCGCCCTGGGCAGCATAAGGAGGCCAGGATACTGGTTTACAAAATgttgcctctcctctcttcctcacacACCCTCCACTGGGCCAGACTCAGTTGGCTTCAGGAGGCCCCTGGCACAGAGCAGCAGACCAGTGGGGCCTCACCCACCTCACCACAGAAGACCTGGTGCCACACCTCTCCCACAGCCACACAGCAGACCACTACCAGGTCCACCCCTGTGAGTGCGTTGACGGACACAGGGAGCTCAGCTAATAGGCGGTTCACCTCGCCGGTCACACGGCCACCGTCCCCGCTCAGGATGACGATCTCATTGGTCCGGGCCAGGGGTGCCGCAACCTTGGCAGCAATCTGTACCAACACAATGACACAAACCTTCTTCACCTGGGTGTTCTTCAGAGAGAACTCATCTAACACAGCCTCTAGTTGTCATGTTTAAACCAAATCAAATGATAAGttgcaataaaaataaaaaaacatttatataT
>XR_005034953.1
tcctttgacctcgaggcttggtttttgctctgacatgcactgtcaactgtggatatagacagGTGGTTCTCCACTCCATGCATAAGTACCAGCCCCGCCTGCACATTGTCCTGTCTCCAGACCCCCACAGCCCCCTGCGCTTCACCTTCCCTGAGGCAGCCTTCATCGCTGTCACTGCCTACCAGAACTCAGAGATAACAAAACTCAAGATAGACAACAACCCCTTTGCAAAAGGCTTTTGTGACAACGGGCTGAACAGAAAAAAGTTCAGAGAAAAGGAAGGACAGAGCTCTGACAAACTAAATTAAGATCCAGACCAGTGGAGTCAAATGATGAGGTTGATGTTACCGTCTCCTGCTCTAGCTCAGTGGATTCCCATGGTGCAGTAGGATACAGGACTGATGACATCacatctctctctgctgtccctGACCCATTCATCTCTGCCTTCATGAACTGGGGAGATGCAGCTGCAACCCTGCCCTGTGGCCAAGAGTGATGGAGGGTCCCGGACCAAAggacccacaacaaccacaaacacaacacacttcGTACCTGGGCCTATGACCGCCCTGGGCAGCATAAGGAGGCCAGGATACTGGTTTACAAAATgttgcctctcctctcttcctcacacACCCTCCACTGGGCCAGACTCAGTTGGCTTCAGGAGGCCCCTGGCACAGAGCAGCAGACCAGTGGGGCCTCACCCACCTCACCACAGAAGACCTGGTGCCACACCTCTCCCACAGCCACACAGCAGACCACTACCAGGTCCACCCCTGTGAGTGCGTTGACGGACACAGGGAGCTCAGCTAATAGGCGGTTCACCTCGCCGGTCACACGGCCACCGTCCCCGCTCAGGATGACGATCTCATTGGTCCGGGCCAGGGGTGCCGCAACCTTGGCAGCAATCTGTACCAACACAATGACACAAACCTTCTTCACCTGGGTGTTCTTCAGAGAGAACTCATCTAACACAGCCTCTAGTTGTCATGTTTAAACCAAATCAAATGATAAGttgcaataaaaataaaaaaacatttatataT
>XR_005034955.1
agcaaagggggagtgaccaactccatattaatggccatgattttggaatgagatgtttgacgaacaggtgtccacatacttttggtcatgtagtgtatctttcCACCATCGCATTTTAAGAGGTGTTTTGTTTTACATCTTGTCTAATTATTTTCAAACATGACGTGAACTTAACTGGTTATTGAAGTAACTGAATAATTTAACATTATGACTTGAAGAGAACCACCTAAGAAACAGACAACTGAGATGATTCCTCTTGAAACTTTCAAAAATGTGTTGCAACAGCACATCCATACAGTTTTTCCCTACCACACAGACTTTATAGTTCATGCCATGGAAATGCAATCAACTGTGGCTTAGATCTTGACTACAAAGGAAAGGGTACCCAAGCATCAGCAGCTCATTTCAACTGAATATGATGCAATGACTCTTCTTGATGTAGATGCTTGTGGTTTGAATCATCCACATATCAAATATAACTGCAACCATCTTCCAGGAGCTTTCATTGTGGGTGGCATTATATGGCACCATATTTGTATAATATTTCAACAAAATTAAATGTATGGATGATGCACGTGGGAGGAGTCAGGTGACACGGTTTAGGGTGAGGGCTGGGTGAGGGTGACAACTTTGCCCAGTCACAGTGGAGACTGACTCTCCAGTTTGGGTGCGGACCAAGGGTGTTTGATTGGTCGGGTTGAGCCTAAAGATAAAGACGTTAGCAGGCCTATCTGGGCGGCACCAGACTATGGGCTAGGGAAATAGATTTCCGTGAATTTTACATCGCATTATTTTCTGTGGCCAGGCAGACATGAATGAGCACGAGGACATGCATTTATTTGAGTGTTGAATGATTTTTACAAAATGTAGTAATACACATTGCTTTACTCTGTAGGGATTGtttgacatttcacatgtgaTAAGTGAAATTAAATTAGCTATTAACACAATTAATTATCAGATGCAAGTATtggaaaaataaaaaatgaccTAAAATATCCCCAAAAGAAAATGATCATGCAGGTCTCTTGGGTAATAAGCCTGATGCAGTGAATTTTGTAGTGTAGTAACTTGAAGGAAAGTGGTTCTCCACTCCATGCATAAGTACCAGCCCCGCCTGCACATTGTCCTGTCTCCAGACCCCCACAGCCCCCTGCGCTTCACCTTCCCTGAGGCAGCCTTCATCGCTGTCACTGCCTACCAGAACTCAGAGATAACAAAACTCAAGATAGACAACAACCCCTTTGCAAAAGGCTTTTGTGACAACGGGCTGAACAGAAAAAAGTTCAGAGAAAAGGAAGGACAGAGCTCTGACAAACTAAATTAAGATCCAGACCAGTGGAGTCAAATGATGAGGTTGATGTTACCGTCTCCTGCTCTAGCTCAGTGGATTCCCATGGTGCAGTAGGATACAGGACTGATGACATCacatctctctctgctgtccctGACCCATTCATCTCTGCCTTCATGAACTGGGGAGATGCAGCTGCAACCCTGCCCTGTGGCCAAGAGTGATGGAGGGTCCCGGACCAAAggacccacaacaaccacaaacacaacacacttcGTACCTGGGCCTATGACCGCCCTGGGCAGCATAAGGAGGCCAGGATACTGGTTTACAAAATgttgcctctcctctcttcctcacacACCCTCCACTGGGCCAGACTCAGTTGGCTTCAGGAGGCCCCTGGCACAGAGCAGCAGACCAGTGGGGCCTCACCCACCTCACCACAGAAGACCTGGTGCCACACCTCTCCCACAGCCACACAGCAGACCACTACCAGGTCCACCCCTGTGAGTGCGTTGACGGACACAGGGAGCTCAGCTAATAGGCGGTTCACCTCGCCGGTCACACGGCCACCGTCCCCGCTCAGGATGACGATCTCATTGGTCCGGGCCAGGGGTGCCGCAACCTTGGCAGCAATCTGTACCAACACAATGACACAAACCTTCTTCACCTGGGTGTTCTTCAGAGAGAACTCATCTAACACAGCCTCTAGTTGTCATGTTTAAACCAAATCAAATGATAAGttgcaataaaaataaaaaaacatttatataT
>XR_005034954.1
cacttaagtttgtggaaatgtgaaagggatgtaggagaatataacacaatagatctgGTGGTTCTCCACTCCATGCATAAGTACCAGCCCCGCCTGCACATTGTCCTGTCTCCAGACCCCCACAGCCCCCTGCGCTTCACCTTCCCTGAGGCAGCCTTCATCGCTGTCACTGCCTACCAGAACTCAGAGATAACAAAACTCAAGATAGACAACAACCCCTTTGCAAAAGGCTTTTGTGACAACGGGCTGAACAGAAAAAAGTTCAGAGAAAAGGAAGGACAGAGCTCTGACAAACTAAATTAAGATCCAGACCAGTGGAGTCAAATGATGAGGTTGATGTTACCGTCTCCTGCTCTAGCTCAGTGGATTCCCATGGTGCAGTAGGATACAGGACTGATGACATCacatctctctctgctgtccctGACCCATTCATCTCTGCCTTCATGAACTGGGGAGATGCAGCTGCAACCCTGCCCTGTGGCCAAGAGTGATGGAGGGTCCCGGACCAAAggacccacaacaaccacaaacacaacacacttcGTACCTGGGCCTATGACCGCCCTGGGCAGCATAAGGAGGCCAGGATACTGGTTTACAAAATgttgcctctcctctcttcctcacacACCCTCCACTGGGCCAGACTCAGTTGGCTTCAGGAGGCCCCTGGCACAGAGCAGCAGACCAGTGGGGCCTCACCCACCTCACCACAGAAGACCTGGTGCCACACCTCTCCCACAGCCACACAGCAGACCACTACCAGGTCCACCCCTGTGAGTGCGTTGACGGACACAGGGAGCTCAGCTAATAGGCGGTTCACCTCGCCGGTCACACGGCCACCGTCCCCGCTCAGGATGACGATCTCATTGGTCCGGGCCAGGGGTGCCGCAACCTTGGCAGCAATCTGTACCAACACAATGACACAAACCTTCTTCACCTGGGTGTTCTTCAGAGAGAACTCATCTAACACAGCCTCTAGTTGTCATGTTTAAACCAAATCAAATGATAAGttgcaataaaaataaaaaaacatttatataT
>TU1211541
cccaaatctaactgcctgtagctctggccctgaagcaaggatatgcatattcttgaaggatatgcatattcttggtaccatttgaaaggaaacacttaagtttgtggaaatgtgaaagggatgtaggagaatataacacaatagatctgGTGGTTCTCCACTCCATGCATAAGTACCAGCCCCGCCTGCACATTGTCCTGTCTCCAGACCCCCACAGCCCCCTGCGCTTCACCTTCCCTGAGGCAGCCTTCATCGCTGTCACTGCCTACCAGAACTCAGAGATAACAAAACTCAAGATAGACAACAACCCCTTTGCAAAAGGCTTTTGTGACAACGGGCTGAACAGAAAAAAGTTCAGAGAAAAGGAAGGACAGAGCTCTGACAAACTAAATCTCAGTGGATTCCCATGGTGCAGTAGGATACAGGACTGATGACATCacatctctctctgctgtccctGACCCATTCATCTCTGCCTTCATGAACTGGGGAGATGCAGCTGCAACCCTGCCCTGTGGCCAAGAGTGATGGAGGGTCCCGGACCAAAggacccacaacaaccacaaacacaacacacttcGTACCTGGGCCTATGACCGCCCTGGGCAGCATAAGGAGGCCAGGATACTGGTTTACAAAATgttgcctctcctctcttcctcacacACCCTCCACTGGGCCAGACTCAGTTGGCTTCAGGAGGCCCCTGGCACAGAGCAGCAGACCAGTGGGGCCTCACCCACCTCACCACAGAAGACCTGGTGCCACACCTCTCCCACAGCCACACAGCAGACCACTACCAGGTCCACCCCTGTGAGTGCGTTGACGGACACAGGGAGCTCAGCTAATAGGCGGTTCACCTCGCCGGTCACACGGCCACCGTCCCCGCTCAGGATGACGATCTCATTGGTCCGGGCCAGGGGTGCCGCAACCTTGGCAGCAATCTGTACCAACACAATGACACAAACCTTCTTCACCTGGGTGTTCTTCAGAGAGAACTCATCTAACACAGCCTCT

Function

NR:

description
PREDICTED: T-box transcription factor TBX6L-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475641.2 False 994 mRNA 0.52 7 34964222 34982028
XR_005034953.1 False 1052 mRNA 0.52 7 34964222 34982028
XR_005034955.1 False 2071 mRNA 0.45 7 34966918 34982028
XR_005034954.1 False 1047 mRNA 0.51 7 34976384 34982028
TU1211541 True 1017 TUCP 0.53 7 34976292 34981964

Neighbor

gene id symbol gene type direction distance location
eral1 eral coding upstream 4618 34954989 ~ 34959604 (+)
shpk shpk coding upstream 143141 34807649 ~ 34821081 (+)
LOC110537497 p2rx5 coding upstream 158753 34778005 ~ 34805469 (+)
ubb ubb coding upstream 193340 34766968 ~ 34770882 (+)
pigl pigl coding upstream 210781 34725810 ~ 34753441 (+)
si:ch211-283g2.1 LOC106567993 coding downstream 59407 35041435 ~ 35069666 (+)
LOC110537511 fam114a2 coding downstream 424809 35406837 ~ 35418103 (+)
LOC110537512 cnot8 coding downstream 436274 35418302 ~ 35421957 (+)
LOC110524522 LOC106605670 coding downstream 486032 35468060 ~ 35471779 (+)
mrpl22 mrpl22 coding downstream 494573 35476601 ~ 35484510 (+)
G1063601 NA non-coding upstream 1280 34961607 ~ 34962942 (+)
G1063549 NA non-coding upstream 98403 34861460 ~ 34865819 (+)
G1063519 NA non-coding upstream 139564 34824445 ~ 34824658 (+)
G1063507 emc6 non-coding upstream 156592 34805738 ~ 34807630 (+)
G1064355 NA non-coding downstream 54655 35036683 ~ 35036989 (+)
G1064373 LOC106567994 non-coding downstream 89709 35071737 ~ 35080332 (+)
G1064377 NA non-coding downstream 94895 35076923 ~ 35081585 (+)
G1064405 NA non-coding downstream 138048 35120076 ~ 35120318 (+)
G1064487 NA non-coding downstream 234199 35216227 ~ 35217155 (+)
G1062648 NA other upstream 1302273 33658278 ~ 33661949 (+)
G1062537 NA other upstream 1455359 33508319 ~ 33508863 (+)
G1062404 NA other upstream 1597973 33359734 ~ 33366249 (+)
G1060470 NA other upstream 3152875 31811062 ~ 31811347 (+)
G1064849 NA other downstream 505710 35487738 ~ 35488944 (+)
G1065619 NA other downstream 1410606 36392634 ~ 36393022 (+)
G1065620 NA other downstream 1411230 36393258 ~ 36393845 (+)
G1065622 NA other downstream 1413022 36395050 ~ 36395342 (+)

Expression


Co-expression Network