G37023


Basic Information

Item Value
gene id G37023
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15813103 ~ 15814248 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU54606
ttcagtgatattttttttatttaaatgatagaCAGTGACAGtctcattaaaacacacaggCTATAAAGTTAGAATTTTAAATCTTCTTAATGTTGTCCTTTCCGGGGTTTTTGTCCATTCCTTCCCTCATCTGATTTTGACCTCTTTATCCGTTGCTCTGAAGTTCCATCATATCCAGAAGATTTTTGAGAGAAGGCAACAGAACCCTTACCATTACTAAACTCAGTAATGGTAACGGTTTCACCGCCACTCTCTTGTCTCAATGTTTTGCGGGGTCCACCGGAAACAGTTGGAAGCGTATTGACCCCCTTGATAGTACATCATCTATACTGTAGTGTCTCAATAATGAACTTACAGTATACGATGATATCCTGTCTAGAGGGCACGATTTATGAAACACCTTCACTTTGGAAATCCGATGAACGTTTGCATCTTctacttttaacattttctaaaacctacttttaaagaactaaaataatatttgacttGTCCGTGTTTCAAAGAATTTTCCAGATCTGTGGCGTCATTATCAATTGAGTTTCCGAAAGGTTTTCCTCTAGAAATGATCGCACCTGTGGAAGATCCCTCACATGGGACTTTTCGTCTAAAAGGAAGAGCAGCTGCCGTCCTGTAGTTCATAGTCACCGGCCGACACTCACCTTTAGATCTGTGTCCTCAGTACTCCTGCAGGAAGTGTTGAAAAACGGCGTAATTGCCTTCATCTGTCACCTTAACCCGTCTTCCCACTTTTGTTTTCACAAGTCTGTCGTCTCCATGCCGTTAAGCGATCGTAAACGTTGCTCCCTTGCTTGTGAGTTTTAAGGCTCgctgctcatttgcatatgaCGACACGAAGGCTGTTCCATCCTTATCATGTCTCTACCCTTCGgtctgctgaccaatcagaaccgTTCCCTATATCAGACCCCGAACAGTTACTCAGCGCCAGGTCTCGCTCTCACGCGACTGAGCCCACACCCAAACTCCCCCAGCCTTGGATTAAACTTGAAATGCTACCaaaaaaatggtgaaatgcTCCAAAGCATGTTTTAATGCGTATCATATTAGTTTCTTCAGCTTTTATCTATAGCCAAAAGtacatattacaataaaattccaaaaaaaacacCTGCGTAATGCCAC
>TU54607
ttcagtgatattttttttatttaaatgatagaCAGTGACAGtctcattaaaacacacaggCTATAAAGTTAGAATTTTAAATCTTCTTAATGTTGTCCTTTCCGGGGTTTTTGTCCATTCCTTCCCTCATCTGATTTTGACCTCTTTATCCGTTGCTCTGAAGTTCCATCATATCCAGAAGATTTTTGAGAGAAGGCAACAGAACCCTTACCATTACTAAACTCAGTAATGGTAACGGTTTCACCGCCACTCTCTTGTCTCAATGTTTTGCGGGGTCCACCGGAAACAGTTGGAAGCGTATTGACCCCCTTGATAGTACATCATCTATACTGTAGTGTCTCAATAATGAACTTACAGTATACGATGATATCCTGTCTAGAGGGCACGATTTATGAAACACCTTCACTTTGGAAATCCGATGAACGTTTGCATCTTctacttttaacattttctaaaacctacttttaaagaactaaaataatatttgacttGTCCGTGTTTCAAAGAATTTTCCAGATCTGTGGCGTCATTATCAATTGAGTTTCCGAAAGGTTTTCCTCTAGAAATGATCGCACCTGTGGAAGATCCCTCACATGGGACTTTTCGTCTAAAAGGAAGAGCAGCTGCCGTCCTGTAGTTCATAGTCACCGGCCGACACTCACCTTTAGATCTGTGTCCTCAGTACTCCTGCAGGAAGTGTTGAAAAACGGCGTAATTGCCTTCATCTGTCACCTTAACCCGTCTTCCCACTTTTGTTTTCACAAGTCTGTCGTCTCCATGCCGTTAAGCGATCGTAAACGTTG

Function

GO:

id name namespace
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU54606 True 1146 lncRNA 0.41 1 15813103 15814248
TU54607 False 803 lncRNA 0.40 1 15813103 15813905

Neighbor

gene id symbol gene type direction distance location
eral1 LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539 coding upstream 1086 15807811 ~ 15812017 (+)
LOC122344749 LOC107680837,LOC107552580,LOC107746822,LOC107680853,LOC107552581,LOC107746861,LOC107718347,LOC107676666 coding upstream 57918 15733936 ~ 15755185 (+)
trpv1 LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666 coding upstream 57918 15748967 ~ 15755185 (+)
shpk shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096 coding upstream 80268 15728431 ~ 15732835 (+)
p2rx5 LOC107680863,LOC107746824,LOC107552584,LOC107676654,LOC107718329,LOC107553591 coding upstream 86922 15717866 ~ 15726181 (+)
tbx16l LOC107681481,LOC107746831,LOC107552576,LOC107553570 coding downstream 1029 15815277 ~ 15821734 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding downstream 46806 15861054 ~ 15875316 (+)
mob1ba mob1ba,mob1b,LOC107680716,LOC103036920,LOC107553598,LOC107584591 coding downstream 64617 15878865 ~ 15885104 (+)
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding downstream 92067 15906315 ~ 15910878 (+)
wdr54 wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694 coding downstream 107510 15921758 ~ 15927369 (+)
G36984 NA non-coding upstream 99909 15712977 ~ 15713194 (+)
G36948 NA non-coding upstream 165996 15643295 ~ 15647107 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding upstream 189810 15621825 ~ 15623293 (+)
G36918 LOC107746818,LOC107680961,LOC107552589 non-coding upstream 212942 15595448 ~ 15600161 (+)
G36926 NA non-coding upstream 229441 15578118 ~ 15583662 (+)
G37024 NA non-coding downstream 605 15814853 ~ 15815065 (+)
G36993 NA non-coding downstream 7644 15821892 ~ 15823751 (+)
G37038 NA non-coding downstream 45511 15859759 ~ 15860103 (+)
G37047 NA non-coding downstream 104258 15918506 ~ 15919285 (+)
G37123 NA non-coding downstream 238784 16053032 ~ 16054008 (+)
G36640 NA other upstream 1092616 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1160192 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1463112 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1475338 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1507799 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 577549 16391797 ~ 16395562 (+)
G37227 NA other downstream 660460 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 672372 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1550601 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1711776 17526024 ~ 17527444 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G180165 NA non-coding CI01000039 null 4134383 ~ 4135372 (+)
rainbow trout (Oncorhynchus mykiss) G1063601 NA non-coding NC_048576.1 CM023230.2 34961607 ~ 34962942 (+)
striped catfish (Pangasianodon hypophthalmus) LOC113531571 NA non-coding NC_047621.1 CM018567.1 6534109 ~ 6535434 (-)