RNA id: CI01000039_03352914_03354134.mRNA


Basic Information

Item Value
RNA id CI01000039_03352914_03354134.mRNA
length 2542
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000039_03352914_03354134
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3351530 ~ 3354476 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAAAACCCATGCAGATTTAATGAGCATAGACGGAAACTCACGCTTAAGTTGCATAAAGATGGCTCGACTTAACACATATAAACATTTGACTCCAAATTAAAAGCTAGTTTACAACAGTCTGCAAGGAGAAATTGTTTTTTATGAATATCAAGACATTGTTTATATAAGAGAATCTCTTGCGTGCCCTTTGTAATCAAATTTTTTTTACTATACTATCGTACAAAAGTTTGGGGTTAGTGAGATTATTTAAAATAAATTTGTATTTTTATTTGGCAAGGACACATTAAATTGATCAAAAGTGACACTAAAGACATTTAAAATTTCAAAAATTTCTATTTAAATGATGTTCATGTGAACTTTCTATATAACAAAGAACCCCGAAAAATAAATGCATCACCGTTTCCACAAAAATATTAAGCAGCACAACCGTTTTCAACATTGATAATAATAATAAATGTTTCTTGAGCAGCAAATCAGCACAGAATGATTTCTGAAGGATCATGTGACACTGAAGAAAGGATTAATGGCTACTGAAAGTTCAGATTTGCCATATTATTTCATAATATTACTGTTTTACTGTACTTTAATGTAATATGCAGCCTTGGTGAGCATAAGAGCACTTCTTTCGAAAACAATAGGAAATCAACAATCTTATCTTACCAAAATTTTTGTGTGTGTACATGTTTTTCTGTCCTGGTGGAGACTGCAACCTGAATGCACACAGACTCATGGGGACTTGTGTCACCGTGGGGAGCTTATAAATCATACAGAATGTTTTTTGTTTTTTTGAAAAAATGCAGAAAGTTTTCTGTGATGTGTGGGTTTAGGGGTAGGGTTAGTCTGGGGTAGGGCATACAATATACAGTTTGTACAGTAAAACCATTAAGTCTATGGAGAGTCCCCACAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTATTGACGGAAAATTGCAATTTATGCTTTTATCTTGTTCAGCAATACAGTTGCTGGCTGCTCATGAACAGTCATGCATAGTCACAAAATCAAATGCTGTGATACTGCCCAAGAACGCAAGTCATACATATTCGACAAAGTCTGAGAAACAACAGTATAGTCGGTCTTTCTAACTCACTTTCGGCTCTGAGGTAATCCAAACCTTTTGGAGAGAGACCATTCCTAAACCATCATGCCCCACCTCCATTTTCCCGCCCCTTACTTGACGTCGAGATTTGCAACAACAAACGGTCTGACCAATAGGAATCCCTAAAAGTTCCGCAGGAGTAGAATGGATAAAGCAAAACTAGCGGGTCAGAAAGGGGCCAGTGTGTGAATTTGAACGCCGTGTTATTATCTGTTCGCGTCCCTAAACGTACTTAATGACGGACGACAAGCGCACGCCCGTGAATTTATCTGTTCAGTCGGGGAAGCGTGATGTTAGCGCTCGAGCACATTTGGATGTGAGCAAGAGACGCGAAAGGACGAGCTCTTGTTTTTCCATCGCCTCGTCCAACCACCACGGCCGTCGGTTGATTTGCTGGCAAGCGATATTAAACTGCCAGTCGGAGCCCGAGTGTCATTACGCTTATGACCAGTATTTGCACGCCTGTGAATCGATCCTGACCGGCCAGAGGAAGAGGTGTCCCAGTCACTGCATCTCGTCGCTTGTGCAACTCAACCTGACCAAGAGCGGCCCGGCGCTGGAAGACTGCAGCTGCGCCTCGGACCCCCGCTGCCGGGAGATCAAACGATCCATCGAGCCGTGCTTGCCCAAAACCAGCAGCATGGGCTGCACCGAAGCCCGGCGCCAGTGCGAGAGGGACAACCAGTGCCGAAACGCGATGGGCGATTATTTATTCCACTGCGGGAAACTCTTCAGCGGCTCCAGCTGCTCGAACCCATGCCGCAATGTCATCGCGTACATGCGCAAACTACCCAAAGCTCAACTCCTGGATTCTTGCGTCTGTGATGGATCAGAGCGGACTATCTGCGAGTTTATCAAAACTAGTATGAAAACGCTTTGCTTTGACTCTCCCCCCGTGGATGAGGAAGGCTCCAGTGGGTTGGACGATGATGAGTCTGATGATGAGGATTACCCAGAGCCAGAGCCCACGAGGAACACAGGTTCTGCTTTTGTGGCATGTTCTGTTTTGACTGTGGTGGCATCCATTTTGGCTCTAGTGAAATCACTTTGAAGGCGAGTTAATAATCTGCTCCAACGGCTGTTCGGGAATAGTGCATTTTGTCAGTTTTCTCCTGTTTTACAATTCATTTATGGCAAGCTGTTATGGCAACATTTATTCCTTAAAACGATCTAGTCTTTGTTTTACACGGACTATTTTAAATTCAGGTAATCCAATAGTGACTATCAACTTTTGTTAGGTGTTCATTAGGTTCTAGTACTTGCTTTTAAGTTACTAGTAGCTATCCCAGAAGTAACTAGTTTATATCCCCCTTTTTTTAGTAACATTTCTTGTCTCACAAGTTACAATTGCTTTTACTGGTCATTTACAATGACACGTCAGTAAATTCCAGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06232 GAS1; growth arrest-specific 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204248 lncRNA upstream 27923 3323338 ~ 3323607 (+) True G179893
TU204238 lncRNA upstream 70093 3280776 ~ 3281437 (+) True G179883
TU204156 lncRNA upstream 83302 3267812 ~ 3268228 (+) True G179802
TU204231 lncRNA upstream 84409 3266529 ~ 3267121 (+) True G179876
TU204230 lncRNA upstream 87427 3262870 ~ 3264103 (+) True G179875
TU204271 lncRNA downstream 17350 3371826 ~ 3372040 (+) True G179909
TU204295 lncRNA downstream 47558 3402034 ~ 3402456 (+) True G179933
TU204258 lncRNA downstream 54815 3409291 ~ 3410259 (+) False G179900
TU204259 lncRNA downstream 54815 3409291 ~ 3410398 (+) True G179900
TU204261 lncRNA downstream 56531 3411007 ~ 3411431 (+) False G179901
CI01000039_03181221_03188468.mRNA mRNA upstream 162295 3180393 ~ 3189235 (+) True CI01000039_03181221_03188468
CI01000039_03170952_03179241.mRNA mRNA upstream 172257 3169850 ~ 3179273 (+) True CI01000039_03170952_03179241
CI01000039_02934780_02935076.mRNA mRNA upstream 416300 2934635 ~ 2935230 (+) True CI01000039_02934780_02935076
CI01000039_02740498_02764324.mRNA mRNA upstream 586702 2740242 ~ 2764828 (+) True CI01000039_02740498_02764324
CI01000039_02724018_02725548.mRNA mRNA upstream 625866 2724018 ~ 2725664 (+) True CI01000039_02724018_02725548
CI01000039_03359162_03369982.mRNA mRNA downstream 4419 3358895 ~ 3370403 (+) True CI01000039_03359162_03369982
CI01000039_03454189_03458136.mRNA mRNA downstream 99564 3454040 ~ 3458140 (+) True CI01000039_03454189_03458136
CI01000039_03596770_03597721.mRNA mRNA downstream 241521 3595997 ~ 3597726 (+) True CI01000039_03596770_03597721
CI01000039_03651436_03658228.mRNA mRNA downstream 296960 3651436 ~ 3658264 (+) True CI01000039_03651436_03658228
CI01000039_03659569_03662364.mRNA mRNA downstream 305093 3659569 ~ 3662652 (+) True CI01000039_03659569_03662364
TU204152 other upstream 219346 3129572 ~ 3132184 (+) True G179798
TU203855 other upstream 852911 2497674 ~ 2498619 (+) True G179528
TU202619 other upstream 2365778 985578 ~ 985752 (+) False CI01000039_00982878_00985676
TU202618 other upstream 2366577 982029 ~ 982406 (+) True G178423
TU204263 other downstream 69561 3424037 ~ 3425555 (+) True G179903
TU204364 other downstream 693817 4048293 ~ 4049972 (+) True CI01000039_04048342_04049635
TU204548 other downstream 720400 4079419 ~ 4079563 (+) True G180149
TU204549 other downstream 720400 4079419 ~ 4079563 (+) True G180149
TU204550 other downstream 724269 4079419 ~ 4079563 (+) True G180149

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060881 True 2588 mRNA 0.39 1 NC_007116.7 44494218 ~ 44496805 (-)