RNA id: TU204550


Basic Information

Item Value
RNA id TU204550
length 145
RNA type TUCP
GC content 0.38
exon number 1
gene id G180149
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4079419 ~ 4079563 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATAATCTCACTGACACAGACAAGCACAGTTCATCAAGAACAAGAAGACGATGAAGACTATTGCAGCTTTTGTTCTTCTTGCCTGCCTGATCGCTGTAGGAGTGAAAGCGCAGGGCAGGTCTTCGAAGGGCAGGTGCTTCTGTGCAGACAAAGGTGCAAACATGGTTTTAGTGAAGAACATTGAGAAGGTTGAAATCCTCCCTCCAAGTCCATCTTGTCGCAAACATGAGATTATTGTCACTCTGAAGAATGGTGCAGGACGGAAATGCATGAATCCAGAGTCAAAATTCACTCAAAATATCATAAAGGCTCTTGAGAAGAGGAGCCAGCAGTCTGTGCACCACAGTACAACTGTCACTGCGCCACAGAAGAACATCCTGACATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204545 lncRNA upstream 7173 4070588 ~ 4071572 (+) True G180146
TU204543 lncRNA upstream 7173 4070588 ~ 4071572 (+) False G180146
TU204541 lncRNA upstream 12092 4065744 ~ 4066653 (+) True CI01000039_04065787_04066284
TU204557 lncRNA downstream 9408 4088971 ~ 4089226 (+) True G180155
TU204558 lncRNA downstream 11539 4091102 ~ 4091522 (+) False G180156
TU204560 lncRNA downstream 11539 4091102 ~ 4091608 (+) True G180156
TU204562 lncRNA downstream 12925 4092488 ~ 4092835 (+) True G180157
TU204565 lncRNA downstream 45985 4125548 ~ 4125931 (+) True G180160
CI01000039_04070151_04075216.mRNA mRNA upstream 3384 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 12114 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04062068_04062375.mRNA mRNA upstream 15807 4062003 ~ 4062938 (+) False CI01000039_04062068_04062375
CI01000039_04058417_04059141.mRNA mRNA upstream 19242 4058343 ~ 4059503 (+) False CI01000039_04058417_04059141
CI01000039_04048342_04049635.mRNA mRNA upstream 28782 4048079 ~ 4049963 (+) False CI01000039_04048342_04049635
CI01000039_04108687_04120437.mRNA mRNA downstream 29124 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04198172_04200073.mRNA mRNA downstream 117683 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04223888_04224220.mRNA mRNA downstream 144325 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04244908_04247540.mRNA mRNA downstream 164941 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 216213 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
TU204364 other upstream 28773 4048293 ~ 4049972 (+) True CI01000039_04048342_04049635
TU204263 other upstream 653190 3424037 ~ 3425555 (+) True G179903
TU204152 other upstream 946561 3129572 ~ 3132184 (+) True G179798
TU203855 other upstream 1580126 2497674 ~ 2498619 (+) True G179528
TU202619 other upstream 3092993 985578 ~ 985752 (+) False CI01000039_00982878_00985676
TU204559 other downstream 11435 4090998 ~ 4091522 (+) False G180156
TU204561 other downstream 11435 4090998 ~ 4091608 (+) False G180156
TU204573 other downstream 144016 4223579 ~ 4223779 (+) False G180162
TU204575 other downstream 144016 4223579 ~ 4223779 (+) True G180162
TU204572 other downstream 144030 4223593 ~ 4223779 (+) False G180162

Expression Profile