CI01000039_00982878_00985676


Basic Information

Item Value
gene id CI01000039_00982878_00985676
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 982750 ~ 985752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU202624
AGGACAAAGTGAAAAGAATACCACTCTTGTAAGTGGAGAGACTTATGGACCAGTGATTAGACCAGGAAGTCATGTTTTTCCATTCAGATTTCAGCTGCCCCAACAAAATATGCCTCCATCTTTTAAAGGATATTATGGCTCGGTTAAGTACGTCATAACAGTAAAGCTGAAGAGGCCATGGAAGTCATCATCTACTACATGTACAGAATTATCCTTTTTGCCCAGGAATGATGGGACCAATGATCATTTACTGCAACCACTATCTGGCACAGAAGAAAAGAAGATGACATTTTTTGGCTCAGGAAAAATGTCAATGACAGCGACAACAGACAAAACTGGCTATATGCAAGGTGAAACAATCCGAGTTTCTGTTGATGTTGACAACTCTTCATCTCGTAACGTCAAGCTAAAGTACAGCCTCAAGCAGAAACAGAAGTTCAAGGCTGAAGGGA
>TU202628
AGGACAAAGTGAAAAGAATACCACTCTTGTAAGTGGAGAGACTTATGGACCAGTGATTAGACCAGGAAGTCATGTTTTTCCATTCAGATTTCAGCTGCCCCAACAAAATATGCCTCCATCTTTTAAAGGATATTATGGCTCGGTTAAGTACGTCATAACAGTAAAGCTGAAGAGGCCATGGAAGTCATCATCTACTACATGTACAGAATTATCCTTTTTGCCCAGGAATGATGGGACCAATGATCATTTACTGCAACCACTATCTGGCACAGAAGAAAAGAAGATGACATTTTTTGGCTCAGGAAAAATGTCAATGACAGCGACAACAGACAAAACTGGCTATATGCAAGGTCTATCTGGATGTGTCTTTCGCCTTCGATCCAACAGTCAAATTTCCTGTGGTTATTCTTCCAGCTGACCAACAATGTCCTCCCTGTCAAGGCCCACCTGTAGGATTCCAGCCATATCTGCCACCTCAGCCTAACCTTGTGCCCTGTCCTGCTGGACAACCACCTCCNNNNNNNN
>TU202619
AAAATGTCAATGACAGTAACAACAGACAAAACTGGCTATATGCAAGGTGAAGCAATCCGAGTTTCTGTTGATGTTGACAACTCTTCATCTCGTAACGTCAAGCTAAAGTACAGCCTCAAGCAGAAACAGACGTTCAAGGCTGAAGGGAGAACTAAAATAAAATTTAAGGATATAGTCAAGGAAACTAAAGATCACATCCCATCTGGAGAAAAGACAAAATTCATAGTGGACATGAACCTTCCACGTGACCTGACTGTCACCATTGAAAACTGCAGAATTATAAAAGTGCAGTATGAACTCAAGGTCTATCTGGATGTGTCTTTCGCCTTCGATCCAACAGTCAAATTTCCTGTGGTTATTCTTCCAGCTGACCAACAATGTCCTCCCTGTCAAGGCCCACCTGTAGGATTCCAGCCATATCTGCCACCTCAGCCTAACCTTGTGCCCTGTCCTGCTGGACAACCACCTCCNNNNNNNN
>TU202623
TTTAAGGATATAGTCAAGGAAACTAAAGATCACATCCCATCTGGAGAAAAGACAAAATTCATAGTGGACATGAACCTTCCACGTGACCTGACTGTCACCATTGAAAACTGCAGAATTATAAAAGTGCAGTATGAACTCAAGGTCTATCTGGATGTGTCTTTCGCCTTCGATCCAACAGTCAAATTTCCTGTGGTTATTCTTCCAGCTGACCAACAATGTCCTCCCTGTCAAGGCCCACCTGTAGGATTCCAGCCATATCTGCCACCTCAGCCTAACCTTGTGCCCTGTCCTGCTGGACAACCACCTCCNNNNNNNN
>CI01000039_00982878_00985676.mRNA
ATATAAAATAAATGCTCATAGTGAATTTTCAAAGTAGGAACTGATCATGTTTGGGGAAAAAAAAAAGAAGTTGTGTGTGTGTAATAAGATTGGGAAATCCTAACTGACTACTTGTATTTCTTACTGTGATGTCTACAGGACAAAGTGAAAAGAATACCACTCTTGTAATTGGAGAGACTTATGGACCAGTGATTAGACCAGGAAGTCATGTTTTTCCATTCAGATTTCAGCTGCCTCAACAAAATATGCCTTCATCTTTTAAAGGATTTCATGGCTCGGTTAAGTACGTCATAACAGTAAAGCTGAAGAGGCCATGGAAGTCATCATCTACTACATGTACAGAATTATCCTTTTTGCCCAGGAATGATGGGACCAATGATCATTTACTGCAACCACTATCTGGCACAGAAGAAAAGAAGATGACATTTTTTGGCTCAGGAAAAATGTCAATGACAGCGACAACAGACAAAACTGGCTATATGCAAGGTGAAACAATCCGAGTTTCTGTTGATGTTGACAACTCTTCATCTCGTAACGTCAAGCTAAAGTACAGCCTCAAGCAGAAACAGAAGTTCAAGGCTGAAGGGAAAACTAAAATAAAATTTAAGGATATAGTCAAGGAAACTAAAGATCGCATCCCATCTGGAGAAAAGACAAAATTCATAGTGGACATGAACCTTCCACGTGACCTGACTGTCACCATTGAAAACTGCAGAATTATAAAAGTGCAGTATAAACTCAAGGTCTATCTGGATGTGTCTTTCGCCTTCGATCCAACAGTCAAATTTCCTGTGGTTATTCTTCCAGCTGACCAACAATGTCCTCCCTGTCAAGGCCCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202624 False 318 TUCP 0.41 3 983831 984953
TU202628 False 391 lncRNA 0.43 3 983831 985752
TU202619 False 175 TUCP 0.43 1 985578 985752
TU202623 True 175 lncRNA 0.44 1 985578 985752
CI01000039_00982878_00985676.mRNA False 842 mRNA 0.39 6 982750 985676

Neighbor

gene id symbol gene type direction distance location
CI01000039_00945143_00973554 NA coding upstream 8608 944976 ~ 974142 (+)
CI01000039_00918013_00930418 NA coding upstream 52086 916396 ~ 930664 (+)
CI01000039_00753373_00753959 NA coding upstream 227959 753173 ~ 754791 (+)
CI01000039_00709842_00711526 NA coding upstream 269814 708970 ~ 712936 (+)
CI01000039_00521668_00538621 NA coding upstream 443013 521580 ~ 539737 (+)
CI01000039_00995716_00997695 NA coding downstream 9993 995669 ~ 997834 (+)
CI01000039_01006584_01006910 NA coding downstream 20908 1006584 ~ 1007655 (+)
CI01000039_01009345_01015577 ARRDC3A, ARRDC3 coding downstream 22382 1008058 ~ 1016390 (+)
CI01000039_01198588_01200416 LYSMD3 coding downstream 212233 1197909 ~ 1200730 (+)
CI01000039_01204364_01206337 MBLAC2 coding downstream 218362 1204038 ~ 1206632 (+)
G178354 NA non-coding upstream 108612 873263 ~ 874138 (+)
G178347 NA non-coding upstream 121061 861446 ~ 861689 (+)
G178207 NA non-coding upstream 249669 732689 ~ 733081 (+)
G178206 NA non-coding upstream 250856 731340 ~ 731894 (+)
G178432 NA non-coding downstream 9243 994919 ~ 996212 (+)
G178436 NA non-coding downstream 120388 1106064 ~ 1106574 (+)
G178494 NA non-coding downstream 146839 1132515 ~ 1134240 (+)
G178538 NA non-coding downstream 245683 1231359 ~ 1231581 (+)
G178541 NA non-coding downstream 249226 1234902 ~ 1235302 (+)
G179528 NA other downstream 1511998 2497674 ~ 2498619 (+)
G179798 NA other downstream 2143896 3129572 ~ 3132184 (+)
G179903 NA other downstream 2438361 3424037 ~ 3425555 (+)
CI01000039_04048342_04049635 NA other downstream 3062617 4048079 ~ 4049972 (+)
G180149 NA other downstream 3089200 4079419 ~ 4079563 (+)

Expression


Co-expression Network