XLOC_031709 (fam78ab)


Basic Information

Item Value
gene id XLOC_031709
gene name fam78ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 71983005 ~ 71995108 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061373
CATCGTCAAGTGTGAGGGCTCGTCTAGTGCGCGCTCTTCTGAGGGTCCGGCTGTAGTGCGCGCTCCGCCGCGGGTTGATGTTCTTGTGGCCGCGGGTGCTGCTTGTGATGGGCTGCATTCAGAGCATCAGATGCAAACCCAAGAGTTTTCGGGACAGCATCATGGTTCTGGAGGTCAACTCCTCCATCGACTCGAACCCCACCAGCATCGACGAGTCCTCCAGCGTGGTGCTGCGCTACCGCACGCCGTACTTCCGCGCCTCCGCCCGGGTGCTGGTGCCGCCGGTTGCCGGCAAGGAGAGCTGGACGGTCGGCTGGATCCAGGCGTGCAACCACATGGAGTTCTACAACAAATACGGATCCAAAGGGATGTCCAGCTGGGAGCTTCCAGACCTGCGAGATGGTAAAATCCAGGCCATCAGCGACTCCGACGGCGTCAACTACCCGTGGTACGGCAACACCACCGAGACCTGCACCATCACCGGCCCCACCAAAAAAGACACGCGCTTCACCGTCAGCATGAACGATAACTTCTACCCGAGCGTGACGTGGGGCGTCCCGGTGAGCGACAGCAGCGTCCCGCAGCTCAGCAGCATCTGGAGGGACCAGAGCTTCAGCACGTGGCTGGTGGCCATCAGTCAGAGCACAGGCGAGGTGCTGGTGCTGCAGACGGTGCGCTGGCGGATGCGTCTGCACATCGCCGTCGACCCAGAGAAACCGCTGGGTCAGAGAGCAGCACTGTGTGAACCCACAGCACAGGAGCCGCCGCAGATCCTGGGAAAAAACGAAGCCATTCCTGCGAACGCTTTGGTCAAACCCAACGCTAATGATGCGCAGGTGCTGATGTGGCGCCCTCGTGTGGGAGAGCCGGTGGTGGTCATCCCACccaaacactgacacacacacacacacacacagggggaAATACCACAGTGCTGCAGCGTGGATTTACTACAGAGCGTCCAGGAAACATTTAGTGAATATAGACTGATTTAGGGAGGAGATCTGACCCAAAGATGATCTATTAAAGCACAGAGGTCAAActcagctcctggagggccgcagctctgcacagttcagcttTAACCCTCATTAAACACTCCTGATCAAGCTCACCCAGTGCATCAGGCTTGTTTGAGAGCTGCAGGAGTGTGTTTGAGCAGGGCTTCAATAGAGTTTAAATCATTCAAAGAAGAGACTGATCACCAAACAGCTTGAGGAATAGATCAGGTATACACTGGATTAATCATGCGGAGACAAACCTGCAACtaaatttcatatatttttatgatgctcttgattttattttgctctttgttgacattttatttaatagttgTTCCTGTAGTACTTCAGGGTCGATGTATTCTGGAACATCTGTGGTGCATTTGGAAAACACTGTTATATTTAATAGATCAAAGCATCTTTAGGAACAGATAAATTATACATCTGAATAAAagtgcttcatttatttatttactaaactaccaaatattacattacaaactccAAAATTccagtt

Function

symbol description
fam78ab Orthologous to human FAM78A (family with sequence similarity 78 member A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-25 Orthologous to human FAM78A (family with sequence similarity 78 member A).

Ensembl:

ensembl_id ENSDARG00000088222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061373 True 1521 mRNA 0.52 2 71983005 71995108

Neighbor

gene id symbol gene type direction distance location
XLOC_031708 NA coding downstream 61776 71918835 ~ 71921229 (-)
XLOC_031707 NA coding downstream 78708 71899924 ~ 71904297 (-)
XLOC_031703 CU927890.1 coding downstream 144485 71662162 ~ 71838520 (-)
XLOC_031710 NA coding upstream 28611 72023719 ~ 72058646 (-)
XLOC_031711 dqx1 coding upstream 71727 72066835 ~ 72075456 (-)
XLOC_031712 CABZ01087674.1 coding upstream 94287 72089395 ~ 72089511 (-)
XLOC_031713 thnsl2 coding upstream 99394 72094502 ~ 72105216 (-)
XLOC_031714 smyd1a coding upstream 111729 72106837 ~ 72126424 (-)
XLOC_031704 NA non-coding downstream 283394 71698251 ~ 71699611 (-)
XLOC_031702 NA non-coding downstream 324430 71652523 ~ 71658575 (-)
XLOC_031701 NA non-coding downstream 497938 71474208 ~ 71485067 (-)
XLOC_031717 NA non-coding upstream 184180 72179288 ~ 72183008 (-)
XLOC_031718 NA non-coding upstream 210593 72205701 ~ 72206391 (-)
XLOC_031724 NA non-coding upstream 427341 72422449 ~ 72428212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_08361191_08367169 FAM78AB, FAM78A coding CI01000059 null 8361191 ~ 8367232 (+)
bowfin (Amia calva) AMCG00019964 fam78a,LOC106563259 coding CM030127.1 CM030127.1 4755524 ~ 4766859 (-)