AMCG00019964 (fam78a,LOC106563259)


Basic Information

Item Value
gene id AMCG00019964
gene name fam78a,LOC106563259
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4755524 ~ 4766859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019964
CATTAATTCGCTGGGCAATTTATATGATGCACTATCAACATTATTACATTGGGGTAGTAGGGTTTGGCTCTGTTTGAGATCTATGTCAATAATAAGGGACTACGTTTCCCAGAATACCAGCCGTTTCAGAAGGAAGTGACGTCTCAAAGCGCTTCAGATAAAAGCTCTGCAGCCCCAGCAGCACAGAGCTAGAGTTACAGAAGGGGAACCTGCTGTGGCTGCAGTAGGACTGGGGCAGGGAATAAAGGACCGTCCGGGATTTATGTCTGAAACATCACTGACAGGGaaggggaaaaggaaaacagacgGGTCTGCAGAATTTCAATTCCCCAGAAAAGTCTCCTGACCAGTATTATAACGGGAAAAAGACAAGTGCACAAGAAAGTTGACCTGATTGCCTTTGGATGCTGCAGTGTCCATTGCACCGTGAAATAAATATAAGTTGATGACATCTCCACGGACCATTAGCATTTATTGCAAGAAGATAAGAAGATGTTTTCCCTCCGTTCGCTATGAATGCCATAGAAAGAAAACGGGGGAATTTATTTATGGCTGTGAGAAGGTGCATCTGGATGGAGTAGTCTATAAATTGTCTTTAATCCTAACAGacctatttaaaaacaaaatgcagcctAATTGAACCGACACGTGTGATGtatcttctatttatttataaacgTATGCGAGTAAAGATTTTACAAATAGGGTAGACTGAAGGATccgtatttttttttctcttcctcctggTAGCTAATGTAAACCCGTCATGCTAGGGATTATATCCCATCCTTTAATAATGAACCCAGAAAGCAAACATCCTAggattatgcatttgtttaatttcatttccatCTAGGGGTTTTGACAATGCAGAAAAGCCGAACTTTAAAATTGCCGCTGAAGTGCGGGTATATTGAATTTgcaattttgtaaaaaaaatgtaatcggcactgtaaatatgaataaaatatgaaacaagaATATGTAAgaagttaatttatttccaaagttatgtttattttatttgtaatgtatttttgacATGAATGTAACCATCGTGACATTAGGCCAGTTGATCAAATGACGGCGAGGGATGTCATCAGTTTAATTATGACACCACTAACCTGTGAACTAATACATATTGATGATGCGGCTTTCTTCAGCAGCAGGAAAGCACAGCTCAAAACGCTTTTACATCCTCTCTGTCTAAGGAAACTATAACGAAAGTAAGAAAAAAGATAAACTACCGCCGGTGCAAGTCTTTTATACAGTGAAAGCTGTTGCGGTCCAATTCCCATTGATGAAACATCATTACAGGGACTAACGGACCTCAGGTTCAATTATATAACGACAACCTTTAACCGTAATCTGTCCACTTTCCTCTGTTCGGGGTCGCAGCAGCTCGGCAGTTTGATTTTAATAGACTTGAAGGGCATGTGTGATAAAAGTCATATTTGGCTCCTACAGATCACTCAGCTTTTTGCATAGAGCTAGatcaatggaaaataaacttaAGTGCAGCAACGACATGTAGTTTCTGAAGAAAGACTAAACAAAAGACACTTTAAAAACgatggatttctttttttgcgGCAAGTGATGGAGGAAGTGAAAAGGAAACTAGCTTCACATGCGagctacacttttttttttgcgggTTTCTAATTCATTGACAGTGCTGCTGTGGACCTGTATCTGAGAAGATCTGCACAACTTCAGCCACCCTAcctgcactggactggactggactggacatcCACAGGAGTCCGTTGTATTATTGTTCTTCATTTTGGGGATCAGGCATTACAGTGTATGGATTTcgtacattttatttctctcctcAGTGGATACTAAAGGTTTAATCACTGTGAAGATCCTATTTCTATACGTCGGTTGCCTCATGCGAGGTGGACGTGGCTGAGGACTGTATTGATATTTAATGCAATGGGCTGTATCCAGAGTATCAGATGTAAGCCCAAAAGTTTCCGTGAGAGCATCACCGTCATTGAAGTGAACTCGAATATCGACCCCAATCCCACCAGCATCGACGAGTCCTCCAGCGTGGTGCTGCGGTACCGGACCCCCCACTTCCGCGCTTCGGCCCGGGTCCTGGTGCCGCCTGTCGCCGGGAAGGAGACCTGGACCGTGGGCTGGATTCAAGCGTGCAACTACATGGAGTTCCACAATAAATATGGAACTAAAGGGATAGACGGTAAAATCCAAGCAATAAGTGACTCAGATGGGGTGAACTACCCCTGGTACGGCAATACGACAGAAACCTGTACCATCGTTGGCCCAACCAAAAAGGACACCAAGTTCACTGTCAGCATGAACGACAACTTCTACCCCAGTGTGACCTGGGGCGTGCCGGTGAGCGACAGCAACCTGCCCCAACTCACCAGCATCCGCAGGGACCAGAGCTTCACCACCTGGCTGGTGGCCACTAACCAGTCCACGGCCGAGACCATCGTGCTGCAGACCATCAAGTGGCGGATGCGGCTGTGCATCGAGATTGACCCCAGCAAACCTCTGGGCCAGCGCTCCAAGCTGTTGGAGCCCACGGCCCAGGAACAGCCACAGATACTGGTTAAAAATGAACCCATTCCCGCCAACGCCATGGTGAAACCCAATGCAAATGACGCTCAGGTCCTGATGTGGCGGCCAAAAATTGGGGAGCCCATTGTTGTTATACCTCCGAAATACTGA

Function

symbol description
fam78a Orthologous to human FAM78A (family with sequence similarity 78 member A).

NR:

description
PREDICTED: protein FAM78A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019964 True 2706 mRNA 0.44 2 4755524 4766859

Neighbor

gene id symbol gene type direction distance location
AMCG00019960 NA coding downstream 127655 4622417 ~ 4627869 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding downstream 491947 4255272 ~ 4263577 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding downstream 560344 4185305 ~ 4195180 (-)
AMCG00019954 NA coding downstream 582915 4164799 ~ 4172609 (-)
AMCG00019953 NA coding downstream 591242 4142990 ~ 4164282 (-)
AMCG00019968 uck1,LOC102793675 coding upstream 108727 4875586 ~ 4886898 (-)
AMCG00019970 NA coding upstream 132081 4898940 ~ 4908555 (-)
AMCG00019972 sh3glb2 coding upstream 163644 4930503 ~ 4940565 (-)
AMCG00019971 NA coding upstream 202331 4969190 ~ 4983211 (-)
AMCG00019975 NA coding upstream 225777 4992636 ~ 5005983 (-)
G59958 NA non-coding downstream 332 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 81915 4673284 ~ 4673609 (-)
G59940 NA non-coding downstream 83356 4671780 ~ 4672168 (-)
G59939 NA non-coding downstream 86366 4668958 ~ 4669158 (-)
G59938 NA non-coding downstream 86655 4668350 ~ 4668869 (-)
G59963 NA non-coding upstream 29867 4796726 ~ 4800269 (-)
G59979 prrc2b,LOC107562325 non-coding upstream 77938 4844797 ~ 4848796 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding upstream 218822 4985681 ~ 4989055 (-)
G60089 NA non-coding upstream 351492 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 386199 5153058 ~ 5157193 (-)
G59806 NA other downstream 1275415 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1569559 3166237 ~ 3185965 (-)
G59720 NA other downstream 1644177 3107801 ~ 3111347 (-)
G59712 NA other downstream 1721189 3031856 ~ 3034335 (-)
G59545 NA other downstream 2248504 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 245585 5012444 ~ 5061512 (-)
G60118 NA other upstream 497055 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 509803 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 524731 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1392718 6159577 ~ 6172474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031709 fam78ab coding NC_007116.7 CM002889.2 71983005 ~ 71995108 (-)
grasscarp (Ctenopharyngodon idella) CI01000059_08361191_08367169 FAM78AB, FAM78A coding CI01000059 null 8361191 ~ 8367232 (+)
grasscarp (Ctenopharyngodon idella) G376733 NA non-coding CI01000180 null 2057704 ~ 2057931 (-)