G60088 (set,LOC105014167,LOC100696975,LOC102777863,LOC107083999)


Basic Information

Item Value
gene id G60088
gene name set,LOC105014167,LOC100696975,LOC102777863,LOC107083999
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5153058 ~ 5157193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75166
GTGCAGattctataattatttttaatagatgtGGGAGTTGGAAATGGTGCATGGGACTTCAGCAAGAGATTGCCACTAGTTTTCCAATGCAAGTCTTCCTGGTAATAAACTTGTCTTAGGGATGGCATGGACAGAAGAGAGACTTCAGGAGAACAAGGAGACGgagcacaaaaaaataaaaaacaaaaacgcatCTTGCTCCCAGGGATTCAAAGATAATATAAAGGGAAAAATTGGAAGGGAGTGGGGTGGAATCTGTCCTGTTCGGGTTTAATCGTCTTCACCATCATCATCCTGAAAGAAAGTAAAGATGCACTTTTACTCTTTGCTTTTCATGTAGTTTTCTTGAATGAGCGTAATGTTTGCCCAAGTCCTTTTAAGTCCAGTGAAAATGCaccttcataaaataaatcctatagatcaaattcaatcaaaatagtttattccCCAATTAATGATTTATGAACAAACATTTCCAAGAGGGAACTACAATCCCTAGTATCTTACCTCCCCTTCTTCCCCATCATCATCCTCTtcatcttcctctccttcttcctcaTCTCCTTCCTCATCAATGTCCTCTAGGCCTTCCTCCTCTTcgtcatcgtcatcatcatcttcaccctctccctcctcgTCGTCCATATCTGGGACCAAGTAGTACTGTAAAGGATTTGGCCAGATGTCGTCCTTGATGACCTCTCCCAGCTCATCGGCTCCTGCGTCAGAGTGGTCTGTGAACCAGGTGAAGAAACTCTCTGGCTCTTCGTGTTGCCTCTTCCTGCCAGCTTTGTTCTGCGTCTGGCTGGAGCGCTTGGTCAGGTCCTGAAATCGCAATGAGATTAAATACTTTAATGCCCAAGACAACTTTTGCCATTTTCTTCAATTCAAGTTCCCTTGGAAACTTAACTGCATAGTAAATGACTATTGGCACACTTTTATAAATAGATATACAAGGTTTATATCTGAATTAATGGTTAGCTGTTCCAGCGTTCTTGACACCTAAACAATGCCCTATCCAAAACATGTTGCACAGATGCAAATCATGATGCGTATATTCACCACTCATTAGGGACTTCATTAACTAGAAGTTATGAAGCACAATGGCTCCAACAACTTGCACAAGAATTCAATGTGAGAAACTGCTGTTTGGCTTCTAACAGGCTAAAGAGGGAAATacagaatgtaaaatgtacctGTAGCTGGAAcggtttgtgtatttatttttcctacatGTATAGATATGAAAGCATTGCTTACCTTTCCTGCTTTCCATTTGATTTCTGTTGACTTTGAGGATGGATCTCCACTTTCATTCAGGTGAAACTCTTTGgaaaggattttgttttcaaaataggGGTTTTCATCAAAGTAAAAATCTATTCTGTATCCTGACTTGATGTCTTCAAATTCTGTCACTTCAACTCTGGTCAGGTAATGAAGTGCTTCTTCATCTTCCTCTCCAAGTAGAGCAGAAACTGGtaaaaggagagggagggaaaggaaaaaaaaaaaactgagcagAAATACCTTCAAGTAAGCAGCACCCCCATTTCTCCCACTCGTACAAAAGCAATTCAAGAATGCTTGTGCAGATTTTACTAACAGACAATACTGTAATCTGCCTGAAATACAAGTtcttaaaacactttaaaaagcaTCTAGCCTTATACACCCTTCTATAAattgtacatgtattttgaaaactttgaagttttaaattgtttgaaaaCTAACCTTGTGGATGGTTGACGAACGTTGTGACCCAGAAGTTGGGGATTTTGGCGATCAGTTCCGATCTCTTCTGGAAGAATGGCTGGCGTAGTTTGTTGTACTTCTGTTCTACTTTTAAAATTTCCTCACTGGCCTGTTCATTCAATCTGGAAGAAAATATTAA
>TU75169
GTGCAGattctataattatttttaatagatgtGGGAGTTGGAAATGGTGCATGGGACTTCAGCAAGAGATTGCCACTAGTTTTCCAATGCAAGTCTTCCTGGTAATAAACTTGTCTTAGGGATGGCATGGACAGAAGAGAGACTTCAGGAGAACAAGGAGACGgagcacaaaaaaataaaaaacaaaaacgcatCTTGCTCCCAGGGATTCAAAGATAATATAAAGGGAAAAATTGGAAGGGAGTGGGGTGGAATCTGTCCTGTTCGGGTTTAATCGTCTTCACCATCATCATCCTCCCCTTCTTCCCCATCATCATCCTCTtcatcttcctctccttcttcctcaTCTCCTTCCTCATCAATGTCCTCTAGGCCTTCCTCCTCTTcgtcatcgtcatcatcatcttcaccctctccctcctcgTCGTCCATATCTGGGACCTTCAGGTAAAGCAAAACATTAGCTTAGATCAGACCATTCCCCCCCCAATTTACATTTAGATGAGCACCTTAATCTAAAAACATTCTTCACTCATCAGGTTTAACCATCCACAATCACCAGAAAAACAAGACACCAAGATCCCACCTTCTCCGATCCCATCTCTAAATTAAGTTTTGATGTTTGAAGTTGACTTACCAAGTAGTACTGTAAAGGATTTGGCCAGATGTCGTCCTTGATGACCTCTCCCAGCTCATCGGCTCCTGCGTCAGAGTGGTCTGTGAACCAGGTGAAGAAACTCTCTGGCTCTTCGTGTTGCCTCTTCCTGCCAGCTTTGTTCTGCGTCTGGCTGGAGCGCTTGGTCAGGTCCTTTCCTGCTTTCCATTTGATTTCTGTTGACTTTGAGGATGGATCTCCACTTTCATTCAGGTGAAACTCTTTGgaaaggattttgttttcaaaataggGGTTTTCATCAAAGTAAAAATCTATTCTGTATCCTGACTTGATGTCTTCAAATTCTGTCACTTCAACTCTGGTCAGGTAATGAAGTGCTTCTTCATCTTCCTCTCCAAGTAGAGCAGAAACTTGTGGATGGTTGACGAACGTTGTGACCCAGAAGTTGGGGATTTTGGCGATCAGTTCCGATCTCTTCTGGAAGAATGGCTGGCGTAGTTTGTTGTACTTCTGTTCTACTTTTAAAATTTCCTCACTGGCCTGTTCATTCAATCTGTCAATTTCATTCTGTACTTCATCAATATGTTCAATTGCTTCCTGTTGCTCTTTTTCGGAGGTCTCGTCCGCTCCGTCATGGTTCGAGTTCAGCTCCTTTTTACTCACTTTCGCCGCCGAGGCCGACATGTTTTTCCCAAGCTGTGGAGGAGGATGTCGTGAGAATGTGTTCGGTTCGCTTTTGGCGTCTTCCCCAGGGAAGAGAAATCTAGTTTTCGCCCGCGTTGGAAATCTGCGAATAAAGCGTGTGTCGCGCTCCGCCACAATATAAAAGCGAGAGagactcaacacacacacacacacactctctctctctctctctctctctctctctctctctctctcacacacactctctctctctctctctctctttctttctcacactctctctctctctctctctctccgccgcCACCACAGAGCTCGAGCTCACTCACGCGCTCCCTGTCCTGACGCACGCGCCCCG

Function

symbol description
set Predicted to enable chromatin binding activity and histone binding activity. Involved in negative regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of neuron apoptotic process. Located in several cellular components, including lipid droplet; nucleoplasm; and perinuclear region of cytoplasm. Part of protein-containing complex. Implicated in autosomal dominant non-syndromic intellectual disability.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75166 True 1897 lncRNA 0.39 3 5155008 5157193
TU75169 False 1640 lncRNA 0.46 7 5153058 5157193

Neighbor

gene id symbol gene type direction distance location
AMCG00019983 NA coding downstream 5 5132046 ~ 5153053 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding downstream 84019 5065640 ~ 5069039 (-)
AMCG00019975 NA coding downstream 147075 4992636 ~ 5005983 (-)
AMCG00019971 NA coding downstream 169847 4969190 ~ 4983211 (-)
AMCG00019972 sh3glb2 coding downstream 212493 4930503 ~ 4940565 (-)
AMCG00019982 NA coding upstream 1166 5158359 ~ 5159320 (-)
AMCG00019985 sptan1 coding upstream 10173 5167366 ~ 5206880 (-)
AMCG00019984 LOC102792584 coding upstream 50580 5207773 ~ 5230138 (-)
AMCG00019987 NA coding upstream 77037 5234230 ~ 5234454 (-)
AMCG00019989 NA coding upstream 140260 5297453 ~ 5301869 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding downstream 164003 4985681 ~ 4989055 (-)
G59979 prrc2b,LOC107562325 non-coding downstream 304262 4844797 ~ 4848796 (-)
G59963 NA non-coding downstream 352789 4796726 ~ 4800269 (-)
G59958 NA non-coding downstream 397866 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 479449 4673284 ~ 4673609 (-)
G60099 NA non-coding upstream 4813 5162006 ~ 5162521 (-)
G60100 NA non-coding upstream 6571 5163764 ~ 5163995 (-)
G60101 NA non-coding upstream 8074 5165267 ~ 5165488 (-)
G60102 NA non-coding upstream 9166 5166359 ~ 5167290 (-)
G60179 NA non-coding upstream 314126 5471319 ~ 5523619 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 91546 5012444 ~ 5061512 (-)
G59806 NA other downstream 1672949 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1967093 3166237 ~ 3185965 (-)
G59720 NA other downstream 2041711 3107801 ~ 3111347 (-)
G59712 NA other downstream 2118723 3031856 ~ 3034335 (-)
G60118 NA other upstream 106721 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 119469 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 134397 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1002384 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 1293429 6450622 ~ 6461428 (-)

Expression


Co-expression Network